Pseudopodoces humilis (Tibetan ground-tit): 102104056
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Entry
102104056 CDS
T02921
Symbol
TNR
Name
(RefSeq) tenascin-R isoform X2
KO
K06252
tenascin
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04510
Focal adhesion
phi04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102104056 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102104056 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
phi00536
]
102104056 (TNR)
Glycosaminoglycan binding proteins [BR:
phi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102104056 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Tenascin
Pur_ac_phosph_N
EGF_2
Lzipper-MIP1
TSC22
Motif
Other DBs
NCBI-GeneID:
102104056
NCBI-ProteinID:
XP_005528766
LinkDB
All DBs
Position
Unknown
AA seq
1355 aa
AA seq
DB search
MGTDGENPVLRNVVISFNLLLLGAVLKPFECRLEMTTEPAERTAVDEAGGLTNCSPPIKE
QPMVFHHIYNINIPLDSCCSSMFKSSAEEVSSEDDRLAEYTEQTSDSESQVTFTHRINMP
KQACKCSTSLPSLQELLSRIEMLEREVSILRDQCTSNCCQENAATGQLDYIPQCSGHGNF
SLESCSCVCMEGWAGSNCSEPRCPRGCSSRGVCLEGQCICDNDYGGEDCSQLRCPAGCGS
RGLCVDGECVCEEGFTGEDCSQLRCPRDCSGRGRCVNGTCECQEGFAGEDCARLHCPNAC
SGRGVCRDGLCVCEEGFDGQDCSAVSPPENLRVTGISDSSIELAWDSPGAATEYVVSYQP
AVPGGTQLQQRVPGDWSSITIADLEPGVAYNVSIYAVISDVFSIPVTSKVMTNLATPQGL
KFKTITETTAEVQWEPFSFPFDGWEISFIPKNNEGGVIAQLPSTVTTFNQTGLKPGEEYT
VTVVALKEQARSPPTSDSVSTLIDGPTQILVRDVSDTVAFVEWTPPRAKVDAILLKYGLA
DGEGGRTTFRLQPPLSQYSLQALRPGARYHLAVSALRGANESQPAFAQFTTEIDAPKNLR
VGSRTPASLELAWDNSEAEAHSYRVVYSTLAGEHYHEVLVPRDTGPTTRATLADLVPGTE
YGIGISAVMDSQQSVPATMNARTELDSPRDLLVTASTETSISLAWTKATGPIDHYRITFT
PASGMASEVTVSRDESQLTLSELEPGTEYTISIIAERGRQQSLEATVDAFTGVRPISQLH
FSQLTSSSVNVTWSDPSPPADRLILTYSPRDEEEAQQVTLDGTRRHTSLMGLQPSTEYLV
SLVAVHGTISSEPVVGSITTGIDAPKDLRVGNVTQESMMVYWSAPIAAFDHYRISYRAAE
GRTDSMAISRDATEYTLQDLQPATKYEIGVKSVRGREESELASITVYTAMDVPLGVTATN
ITPTEALLQWNPPLSEVESYVLVLTRRAVSGETILVDGDKQEYQLTNLLPTTTYTVSMYA
TSGPLTSQTISTNFTTLLDPPTNLTASEVTRRSALLSWVPPVGEIENYVMTYRSTDGSRK
ELIVDAEDTWIRLEGLSETTEYTVHLQAAQNAMRSGLISTTFTTGGRVFANPQDCAQHLM
NGDTLSGVYTISINGDLSQRVPVYCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRVGFGN
LEDEFWLGLDNIHKITSQGRYELRIDMRDGQETAYAYYDKFSIGDSRSLYKLRIGDYNGT
SGDSLSYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGINW
YHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggggactgatggtgaaaacccagtcctgaggaatgtggtcatcagcttcaacttgctt
ctgctgggcgctgtcctcaagccttttgagtgccggctggagatgacaacagagccagct
gagaggacagcggtggatgaggcaggtggcctcaccaactgcagcccacctatcaaagag
cagcccatggtcttccaccacatctacaacatcaacatcccactggacagctgctgctcc
tccatgttcaagtcttcggccgaggaggtgagttcagaagacgaccggctggcagagtac
acggagcagacctccgacagcgagagccaggtcaccttcacccacaggataaacatgccc
aagcaggcctgcaagtgctccacctccctcccatccctgcaggagctgctgagcaggatt
gagatgctggagagggaggtctccatcctccgggaccaatgcacctccaattgctgccaa
gaaaatgcagccacagggcagctggattacatcccgcagtgcagcggccacgggaatttc
agcctggagtcgtgcagctgcgtgtgcatggagggctgggcaggcagcaactgctccgag
ccccgctgcccccggggctgctccagccgcggcgtgtgtctggagggccagtgcatctgc
gacaacgactacgggggcgaggactgctcgcagctccgctgccccgccggctgcggctcc
cgcgggctctgcgtggacggcgagtgcgtgtgcgaggagggtttcaccggggaggattgc
tcccagctgcgctgcccccgcgactgctcgggacggggccgctgcgtgaacggcacctgc
gagtgccaggagggcttcgccggcgaggactgcgcaaggctgcactgccccaacgcctgc
agcggccggggagtctgccgggatgggctctgcgtctgcgaggaaggctttgacgggcag
gactgctcagcagtgtctcctcctgaaaacctgcgggtgacggggatcagcgacagctcc
atcgagctggcttgggacagccccggggcagccaccgagtacgtggtctcgtaccagccc
gcggtgccagggggcacccagctccagcagagggtgcctggggactggagcagcatcacc
atcgcggatctggagccaggtgttgcctacaatgtcagcatctatgcagtcatcagtgat
gtcttcagcatccccgttacctccaaggtgatgactaacctcgccacaccacaggggctg
aagttcaagaccatcacagagacgacagcagaggtgcagtgggagcccttctccttcccc
ttcgacggctgggagatcagtttcattcccaagaataatgagggtggtgtgattgcccag
ctccccagcaccgtcaccaccttcaaccagacggggctgaagccaggggaagagtacact
gtcaccgttgtggccctgaaggaacaagccagaagccctcccacctccgacagcgtctca
accctcatcgatggcccgacgcagatcctggtgcgggatgtctccgacacggtggccttc
gtggagtggaccccgccgcgtgccaaggtggatgccatcctgctgaagtacgggctggcg
gacggggagggcgggaggaccaccttccgcctgcagccccccctcagccagtactccctg
caggccctgcgccccggcgcccgctaccacctcgccgtcagcgccctccggggtgccaac
gagagccagccagccttcgcacagttcaccacagagattgatgcccccaagaacctgcgg
gtgggctcgcggacccctgccagcctcgagctcgcttgggacaacagcgaggccgaggca
cacagctacagggtggtctacagcaccctggccggggagcactaccacgaggtcctggtg
ccgcgcgacaccggtcccaccacccgggccaccctcgcagatctggtgccaggaacggag
tatggcattgggatttcagccgtgatggacagccagcagagtgtgccagcgactatgaat
gccaggactgagcttgacagcccccgggacctcttggtgacagcctctactgagacatcc
atctcactggcttggaccaaagccacaggtcccatcgaccactaccgcatcaccttcacc
cctgcctcaggaatggcctctgaagtgacagtgtcccgggatgagtcacagctcaccctc
tcagagctggagcctgggacagagtacaccatctccatcattgctgagaggggacggcag
cagagcctggaggccactgtggatgccttcacaggtgttcggcccatctcacagctacac
ttctcccagctgacatcctccagtgtgaatgtcacatggagtgacccatccccaccagca
gaccgcctcatcctcacctacagcccccgggatgaggaggaggcacagcaggtcacactc
gatggcacccggaggcacaccagcctgatgggcttgcagccatccaccgagtacctggtg
tcactggtggctgtgcatggcaccatcagctctgagcctgtcgtgggctccatcacaaca
gggattgatgcaccaaaggacctcagggtgggcaacgtcacccaggagtccatgatggtc
tactggagtgctcccattgctgcctttgaccactataggatatcctaccgtgctgccgaa
gggaggacagacagtatggccatctccagggacgccaccgagtacaccctccaagacctg
cagccagccaccaagtatgagatcggagtgaagagcgtgcggggccgggaggagagcgag
ctggcctccatcactgtatacacagccatggatgtccccctgggggtcacagccaccaac
atcactcccaccgaggcgctgctgcagtggaacccgccgctgtcagaggtggaaagctat
gtcctcgtccttacgcgtcgtgcagtttcaggagaaacaattcttgtggatggagacaag
caggagtaccagctgaccaacctgctgcccactaccacctacacagtctctatgtatgcc
accagcgggcctctcaccagccagaccatcagcaccaacttcactactcttttggatcct
ccaacaaatctgacagccagtgaagtcacacgacggagcgccctgctgtcctgggttcct
cccgtgggagagatcgagaattatgtcatgacctacagatccaccgatggcagccggaag
gagctgattgtggatgctgaggacacgtggatccgtctggaggggctttctgagaccaca
gagtacacggtgcacctgcaagctgcccaaaacgccatgcggagcggcctcatctcaacc
accttcaccacaggaggacgtgtctttgctaaccctcaggactgcgcacagcacctgatg
aatggagacacgctgagtggggtctacaccatctccatcaacggggacctcagccagcgg
gtgccggtgtactgcgacatgaccaccgacggaggtggctggattgtcttccagcggcgg
cagaacgggctgactgatttcttccggaaatgggcagattaccgggttggctttggaaac
ttggaggatgagttttggctgggcttggacaacatccacaagatcacgtcccaagggcgc
tatgagctgcgaatagacatgagggatggtcaggaaacagcatatgcctactatgacaag
ttctccattggtgactcccggagcctctacaaactgcgcattggggactacaatggcact
tcaggagactccctctcctatcaccagggacgccccttctccaccaaggacagggacaat
gatgttgctgtgaccaactgtgccatgtcctacaaaggagcctggtggtataagaactgc
caccgcaccaacctcaacggcaagtacggagagtcccggcacagtcagggtattaactgg
taccactggaaaggccatgagttctccatcccctttgtggaaatgaagatgcgaccttac
aaccaccgtaacatctctgggaggaagcgacggtccctacagctctga
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