Pseudopodoces humilis (Tibetan ground-tit): 102106843
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Entry
102106843 CDS
T02921
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03015
mRNA surveillance pathway
phi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102106843 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
102106843 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phi03019
]
102106843 (PABPC1)
03041 Spliceosome [BR:
phi03041
]
102106843 (PABPC1)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102106843 (PABPC1)
mRNA cycle factors
Stress granule specific factors
102106843 (PABPC1)
Spliceosome [BR:
phi03041
]
Complex C
Other components
Complex C specific factors
102106843 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_5
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
102106843
NCBI-ProteinID:
XP_005517042
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMST
QRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHV
QGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLES
PESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctgcacccc
gacgtgaccgaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgcagggacatgatcacccgccgctcgctcggatacgcctatgtcaacttccag
caacccgccgacgctgaacgagctttggacaccatgaactttgatgtcattaaaggcaaa
ccagtgcgcatcatgtggtctcagcgcgatccatctctacgcaaaagtggtgtaggaaac
atcttcatcaaaaatttggacaaatcaattgataacaaagctttgtatgacacattttct
gcttttgggaacatcctgtcttgtaaggtggtgtgtgatgaaaatggatccaagggttat
ggatttgtacattttgagacacaagaagctgcagaaagagctattgaaaaaatgaatggt
atgctgcttaatgaccgcaaagtatttgttggaaggtttaaatctcgcaaggaacgtgag
gcagagcttggagccagagcaaaagaattcaccaatgtttacatcaaaaattttggagaa
gacatggatgatgagagacttaaggaactctttggcaagtttggtcctgctttaagtgta
aaagttatgactgatgagagtggaaaatccaaaggctttggcttcgttagttttgaaaga
cacgaagatgcccagaaagctgtagatgagatgaacgggaaagagctcaatggaaaacaa
atctatgttggccgggctcagaaaaaggtggaaagacagacggagctgaagcgcaagttt
gaacaaatgaagcaggacaggatcaccagataccagggtgtaaacctttacgtgaaaaat
cttgatgatgggatcgatgatgagcgtctccgaaaagagttctctccatttggtacaatc
actagtgcaaaggtgatgatggaaggtggccgcagcaaaggatttggatttgtgtgcttt
tcgtcaccagaagaagccaccaaagcagtcacagaaatgaatggtagaattgtggctact
aaaccattatatgtagctctagcccagcgtaaagaggagcgccaagctcatctcaccaac
cagtacatgcagaggatggcaagtgtaagagcagtacctaatcctgtaatcaacccctac
cagccagcacctccttcaggatacttcatggcagctattcctcagactcagaaccgtgct
gcgtactatcctactaatcagcttgctcaacttgctagacctagtcctcgatggactgct
cagggtgccagacctcatccattccaaaacatgcctggtgctatccgcccagcagcaccc
agaccacctttcagtaccatgagaccagcttcttcccaagttccacgagtcatgtcaaca
cagcgtgttgctaatacatcaacacaaacgatgggtccacgtcctgcagcagcagctact
gcagccactcctgccgtgcgcacagtaccacagtacaaatacgctgcgggtgttcgcaat
cctcagcagcacctcaacacgcagccacaggttgctatgcagcagcctgctgtccatgtg
caaggtcaggaacccttgactgcttccatgttggcttctgcccctccacaagaacaaaag
cagatgttaggtgaacgtctattccctcttattcaaagcatgcaccctactctggcgggt
aagatcactggtatgttgttggagattgacaactctgaactcctccacatgctcgagtct
cccgagtctcttcgttcgaaggttgatgaagctgtagccgtactacaagcccaccaagct
aaagaggctgctcaaaaggcagtcaataatcccactggggttccaagtgtttaa
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