Scheffersomyces stipitis: PICST_83690
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Entry
PICST_83690 CDS
T01023
Symbol
SNF2
Name
(RefSeq) component of SWI/SNF global transcription activator complex
KO
K11786
ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
Organism
pic
Scheffersomyces stipitis
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pic03021
]
PICST_83690 (SNF2)
03036 Chromosome and associated proteins [BR:
pic03036
]
PICST_83690 (SNF2)
Transcription machinery [BR:
pic03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SWI/SNF complex
PICST_83690 (SNF2)
RSC complex
PICST_83690 (SNF2)
Chromosome and associated proteins [BR:
pic03036
]
Eukaryotic type
Chromatin remodeling factors
RSC complex
PICST_83690 (SNF2)
SWI/SNF complex
PICST_83690 (SNF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Bromodomain
SnAC
HSA
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
4838915
NCBI-ProteinID:
XP_001384421
JGI:
83690
UniProt:
A3LTF0
LinkDB
All DBs
Position
4:complement(653510..658492)
Genome browser
AA seq
1566 aa
AA seq
DB search
MNRQLTREDIHRIVDRWKQLKAQFGDQAINVPEFAQLNKIVKYFNQQQQMLQQNPNLRQQ
QQQQQQQQQQQQQQQQQQQQQQLQNQNQQNPALNPQSSSQLNNQQIPQSLPQQQHQGIHP
QGTPSHQQQQFPQSQSLNQMQFNNNNNTSNVSGTGSGSQGSSSESAFTTQQFQLVKSQFQ
ALKYLLNKPGANNPPIPQNLISFVTNDRSAVPSGGYLPARPGFQQPSNDGLLNQNVIGMQ
QGNLNKGMIPGQNVNQNLSIKNNTDVNNLNNLNNSKPPIKMEASKQKVSVPIQQIPPQSQ
QLQQPVSKPIKPEGLSDSGRLTDSLLKSKPYIRQPQPPVPLSKLVPDKTSDSKNIIIPIN
KPNVQVDSFELPEIFGDSVKDIEYGEIYSPQSRRQIPGLMPDGINSQEIFNNKEAFIVMQ
IELEMDSLRKKLDTIQDNDKERQRIEAELASLEMIPFQKELRGKLLSQVWFSKSLLPNSH
PNFLAKFNTLSLENVATAHDLYRHQLETLLQVQNQKHQSTINEILSYRENKDVTLARRRD
RLNRFATKISSFHNQTAKEEQKRIEKMAKQRLQALKSNDEEAYLKLLDHTKDTRITHLLK
QTNQFLDSLAQAVQNQQRETSERFAIRDGTSVETNDEDKREKVDYYHVAHRIKEEVTKQP
SILVGGTLKEYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLITYLVEVKKINGPF
LVIVPLSTLTNWNLEFDKWAPSVKKITYKGTPNQRKVMQQDIRQGNFQILLTTFEYIIKD
KALLSRIRWVHMIIDEGHRMKNANSKLSETLTHSYHSDYRLILTGTPLQNNLPELWALLN
FVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRPFLLRRLKKDV
EKDLPNKVEKVVKCKMSSIQSKLYQLMLKYNILYASDPNGPSDVPLIIKNANNQIMQLRK
ICNHPFVYEEVENLINPTIETSDIIWRVGGKFELLDKILPKFKTTGHRVLIFFQMTQIMD
IMEDFLRLRGMKYMRLDGGTKADDRTALLKLFNAPDSDYFCFLLSTRAGGLGLNLQTADT
VVIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITEDSVEEMILERAHAKLEIDGKVIQ
AGKFDNKSTSEEQEAMLRALIEKEEERRQHGNDEEEEDLNDDELNQIIARNDLELVTFRR
LDEERAQATKEAKYPTRLFSDQELPEIYQKDPEELIRKDEVILEDYGRGTRERKTATYDD
HLTEEQWLRQIDGVVSEDSDDEVKAKPSKLKRGRPRGRPRSKGPEPSDSKEGTPDVIQTD
TESVTSVKRALTDEAIASAKRQKSATPKPAPASRSKKAAARNRGARSKISLLNRSTPSVD
PLTPDERAQLQNVLETIYGLVINYKNSHDRRLSDLFMVKPSRKLYPDYYVLIKNPIALDI
VKKRVFSKTYSQIREMLEDIHLMFSNARIYNEEGSIVYQDATALEQLAIDKFKEMSGDLS
AEEIEKILDFREFDETFNLKPLVVPAAIKQPVETKLEQLDNDEPIDSPLVGISTNGGTEL
STPVNP
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgccagttgacacgtgaggacatccaccgtatcgtcgacagatggaaacaattg
aaggcccagtttggcgaccaggccatcaatgttcctgaatttgctcagttgaacaagata
gtgaaatatttcaaccagcaacagcagatgctccagcaaaatccgaacttgagacaacaa
cagcagcaacagcagcaacagcagcaacagcagcaacaacagcaacaacaacaacaacag
cagcagctccagaaccagaaccaacaaaatccagcccttaacccacaaagctcgagccaa
ctcaataaccaacaaattccacaactgcttccacagcaacaacaccagggtatccatcca
cagggaacacctctgcaccaacagcaacaatttcctcagtcgcaatcacttaaccagatg
cagtttaacaacaataacaatactagcaatgtatctgggaccggttctggttcccaggga
agttcgagtgaatctgcatttaccactcaacagtttcaacttgtaaagtcgcagtttcag
gctctcaagtatcttttgaacaagcctggagccaacaatccccctattccgcagaatttg
atctcgtttgttactaacgacagatctgctgttcctagcggtggatatcttcctgcaaga
cctggatttcagcagccttctaacgatggactcttaaaccagaatgtgatcggaatgcag
cagggcaatctcaacaagggaatgattccgggccaaaatgtaaaccagaacttgtcaatt
aagaataacaccgatgttaataatttgaacaatcttaataatagtaaaccgcctatcaag
atggaggcatcgaaacagaaagtatcagtaccgatacaacagattcctccacaatcccaa
caacttcaacaaccagttctgaaacctataaagcctgaaggtttgtccgattctggtaga
ttgactgattcccttttgaagctgaagccttacattcgtcaaccacaacctcctgttcct
ctcagtaaacttgttcctgataagactagcgatagcaagaacattatcattcccataaac
aagccaaatgtacaagtggacagttttgaacttccagagatatttggagattctgtgaaa
gacattgagtatggtgagatctactctccacagagtcgtcgtcaaattccgggattgatg
cctgatggaatcaattcccaggaaatctttaacaacaaagaagcatttattgtgatgcaa
attgagcttgaaatggactcattgagaaagaaactcgatactattcaagacaatgataaa
gagcgccagagaattgaggcggaattggctctgttagagatgattcctttccaaaaggag
ttgcgcgggaagttgttgtcacaagtctggttcagcaagtcgttgttgcccaattctcat
cccaacttcctagcaaagttcaacaccttatctcttgaaaatgttgctacagctcacgat
ctctatagacaccaattggaaactttacttcaagtgcagaaccagaagcatcagagcact
atcaatgagatcttgctgtacagagaaaataaggatgtaactcttgcgagaagaagagat
cgcctcaacaggtttgccaccaagatcagcagtttccacaatcagacagccaaggaagaa
cagaagagaatagaaaagatggccaaacaacgtttgcaagctttgaagctgaacgatgag
gaagcctatttgaaattgttagaccacacaaaagatactagaattacgcatcttttgaaa
cagaccaaccagttcttggattcgttggctcaagctgtccagaaccagcagagggagacc
agtgaaagatttgccataagagacggaactctggtggagactaatgatgaagacaaaaga
gaaaaggtagactactaccatgtggctcatcggatcaaggaagaagtcactaaacaacct
tctatcttggtaggaggtactttgaaggagtatcagattaagggtttacagtggatggtt
tcgttattcaataaccatttgaacggtatcttggctgatgaaatgggattgggtaagact
attcaaactatttctttgattacatacttggtggaagttaagaagatcaatggaccattt
ttagtgattgtacccttatcaacgttgaccaattggaacttagaattcgataaatgggcc
ccatcagtgaagaaaatcacttataaaggtacacctaaccaacgtaaggttatgcaacag
gatatcagacagggtaatttccaaatcttgttaactactttcgagtacattatcaaggat
aaggcgctattgtcgagaatcaggtgggtacacatgattattgatgaaggacatcgtatg
aagaatgccaactccaaactttctgagacattgacccatagctatcacagtgactaccgt
ttgattttgacaggtactcccttacaaaataacttacctgagttgtgggctcttttgaat
ttcgttttgcccaagatattcaactcagtaaagtcgtttgacgaatggttcaacactcct
tttgccaacactggtggacaggacaagatcgaattaagtgaagaagaaactttattggtt
atcagaagattgcacaaggtgttgagacctttccttttgagaagattaaagaaggatgta
gaaaaggacttacccaataaggtcgagaaagtggtcaaatgtaagatgtcatctatacaa
tcgaagttgtatcagcttatgttgaaatacaacatcttgtatgctagtgaccctaatggc
cccagtgatgttccgttaatcatcaagaatgctaacaatcagattatgcaattgcgtaag
atttgtaaccatccatttgtttatgaggaagtggagaatttgatcaatcctactattgaa
acaagtgatatcatttggagagttggtggaaagtttgagttgttggacaagattttgccc
aagttcaagaccactggccatagagtgttgattttcttccagatgacccagatcatggat
atcatggaagatttcttgagattgcgtggaatgaaatatatgagattggatggtggaacc
aaagccgacgatagaactgctttgttgaagttattcaatgccccagattccgactatttc
tgtttcttgttgtctaccagagctggtggtttaggtcttaacttgcagacagcagatact
gttgtcattttcgacactgattggaacccgcatcaagatttgcaagctcaagacagagct
catagaattggacagaaaaacgaagtgagaattttgagattgattaccgaagattctgtc
gaagaaatgattttggaaagagctcatgctaagttagaaattgatggtaaggtcatccag
gctggtaagtttgataacaagtctacttccgaagaacaagaggctatgttgagagccttg
atcgaaaaggaggaagaacgtagacagcatggaaatgacgaggaagaagaagacttgaac
gatgacgagctcaatcagattatcgccagaaatgaccttgagttggtgacgttcagaaga
ttggacgaagaaagagcacaagctaccaaagaagcgaaatacccaacgagattgttttct
gaccaggaattgcctgagatttaccagaaggatcccgaagagttgatcaggaaggatgaa
gtgattctagaagattatggaagaggtacaagagaacgaaagacggctacctatgatgat
catttgactgaagagcaatggttgagacaaattgatggtgttgtttctgaagacagtgat
gatgaggtaaaagccaagccttcgaagttgaagagaggaagacctcgtggaagacccaga
tcaaagggccctgaaccttctgatagcaaagaaggcactcccgatgtaatccagacagat
actgagtctgttacttctgtgaaaagagctttgactgatgaagctatagcttctgccaaa
cgtcaaaagtccgccacccctaagccagcacccgccagtcgctccaagaaggcagcagct
cgtaacagaggtgcccgtagtaagatatcactcttgaatcgttcaactccatcagtggat
ccattgactcctgatgaaagagcacaattgcagaatgttcttgagacaatctatggttta
gttatcaactacaagaactctcatgacagaagattgagtgacttgttcatggtgaagcca
tcgagaaagctctatccagactattatgtcttgatcaaaaatccaattgctttagacatt
gtaaagaagagagtgttttccaagacttatagccaaatcagagagatgttagaagatata
catttgatgtttagcaacgccagaatctacaatgaggaaggttctattgtgtatcaagat
gccacagctctcgagcaattggccattgataagttcaaggagatgtcaggtgatttgagc
gctgaagaaattgaaaagattcttgactttagagaatttgacgagaccttcaacttgaaa
cctttggtagttccagctgccataaaacaaccagtagaaaccaaactcgagcaactagac
aacgacgagcctattgacagtcccctagttggaatctccaccaatggtggaaccgagttg
tctacgcccgtaaacccttag
DBGET
integrated database retrieval system