Psychromonas ingrahamii: Ping_3396
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Entry
Ping_3396 CDS
T00450
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pin
Psychromonas ingrahamii
Pathway
pin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ping_3396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pin03019
]
Ping_3396
03400 DNA repair and recombination proteins [BR:
pin03400
]
Ping_3396
Enzymes [BR:
pin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ping_3396
Messenger RNA biogenesis [BR:
pin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ping_3396
DNA repair and recombination proteins [BR:
pin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ping_3396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pex14_N
Motif
Other DBs
NCBI-ProteinID:
ABM05082
UniProt:
A1T017
LinkDB
All DBs
Position
complement(4197575..4199485)
Genome browser
AA seq
636 aa
AA seq
DB search
MLQLLQQYFGFSTFRAGQEKVIQALFAGHSAAAIFPTGSGKSLCYQLPALHLPHLTLVVS
PLLALIQDQLEFLQSKGISAASIHSLQTPAESSQVYKDIAGGQVKILFISVERLNSERFR
LFLKKIPISLLVVDEAHCISEWGHNFRPDYLKLALYRREFNIPQVLLLTATATQKVIADM
GNKFAIDADNITLTGSYRANLNLSVLGVGSFDKLNTLLPWLDDRKQQAGIIYVTLQKTAE
EVAKQLSSSGVPAQAYHAGMNGEQRQSIQQQFMSGELPLIVATIAFGMGIDKSDIGFVVH
YDLPKSIENYAQEIGRAGRDGRPADCLVLANKNNLNTLENFVYADTPEPSAIDFVLNEIG
QTNGQWEMVMNSLSSESNIRLLTLKTLLVYLELEGLLQPAYSYYAEYKYKLLVPEQVLLE
RFKDERYNFVQAILQSSNKARTWATIDFEKMQSLYPSDRKRVITAIDYLDQQGLIELQSK
QMTQVYRVFKEALNGNLRELLVQRFNEKEGNEVQRIHFLLDFFASDQCLNLQLAHYFSDN
NLQQPCGHCSVCAGYPAIMPATPVLLPLKKTDFEELSAEIRRKLGSQTTSVLLARFFCGL
ITPVFTRLKVRSVKGFAVLEKYRFGEVKAWVEEHLL
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgttgcagttactccagcagtatttcggtttttccacctttagagcaggtcaggaaaaa
gtgattcaggctttatttgcagggcacagtgctgccgccatatttccgaccggctcaggt
aagtctttatgttatcaactccctgcactacatctgccgcatttaaccttagtggtttca
ccactgcttgctttaattcaggatcaacttgaatttttacagagcaaagggatcagtgca
gcgagtattcactccctgcaaaccccggctgaatcttcacaggtttataaggacatcgcg
ggcgggcaggtgaaaattttgtttatttcggttgaacgattaaacagtgaacgtttccgt
ttgtttttgaagaagattcctatttccctgctggtggttgatgaagcgcactgtatttct
gaatggggacataactttcgacccgattatctgaagctcgcattatatcgccgtgaattt
aatatcccgcaagtattgttattaacggccacggcaacacagaaagtgatcgcggatatg
ggcaataaatttgccattgacgccgataatattaccctaacgggatcttaccgggcgaat
ctaaatttgtcggtgttaggcgttggcagttttgacaaactcaacacattgctaccctgg
ctcgatgatcgtaagcagcaagcgggcattatttatgtgaccctgcagaaaaccgccgaa
gaggtggccaagcagttaagttcttcaggcgttcctgctcaggcttaccatgcagggatg
aatggcgagcaacggcaatccatacagcagcagtttatgtccggagagttacccttaata
gttgcgaccattgcatttggaatgggcattgataaaagcgatatcggttttgttgtccat
tatgatttaccgaaatcgatcgagaattatgctcaggaaattggccgtgccgggcgtgat
gggcgacccgctgattgtttagtgttggccaataaaaataatcttaataccctggaaaat
tttgtttatgccgacactccggagcccagtgcgattgattttgtgctcaatgaaataggg
cagaccaacgggcagtgggagatggttatgaacagcctctccagcgaatcgaatattcgt
ttattgacccttaaaacattattggtttatttagaattagaaggtctgctgcaacccgct
tatagttattatgctgaatataaatacaagttattagtaccggaacaggtcttattagag
cgctttaaagatgagcgttataattttgtgcaggcaatattacaaagctccaacaaggca
agaacctgggcgaccattgattttgaaaagatgcaatcgctctacccgtcggatcgcaag
cgcgttatcacggcgattgactaccttgatcagcaagggctaatcgaactgcagagcaag
cagatgacccaagtctatcgtgttttcaaagaagcattaaatggcaatttacgtgaactg
ctggtgcagcgttttaatgagaaagaaggcaatgaagtgcagcgtattcattttttactg
gatttctttgccagtgaccagtgcctgaatttgcagctcgcccattatttctcagataat
aatttacagcagccctgcggtcattgttctgtctgtgccggatatcctgccatcatgcct
gctacccccgttttactccccctgaagaagactgattttgaagaattaagtgcggaaatt
cgcagaaaattaggaagtcagaccacttcagtgctattggcacgtttcttctgtggatta
atcactcctgtttttacgcgcctgaaagtgcgcagtgttaagggttttgcagtgttagaa
aaataccgttttggcgaagtaaaagcctgggtagaagaacaccttttataa
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