KEGG   Pseudomonas knackmussii: PKB_2032
Entry
PKB_2032          CDS       T03081                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pkc  Pseudomonas knackmussii
Pathway
pkc03030  DNA replication
pkc03410  Base excision repair
pkc03420  Nucleotide excision repair
pkc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pkc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PKB_2032 (ligA)
   03410 Base excision repair
    PKB_2032 (ligA)
   03420 Nucleotide excision repair
    PKB_2032 (ligA)
   03430 Mismatch repair
    PKB_2032 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pkc03032]
    PKB_2032 (ligA)
   03400 DNA repair and recombination proteins [BR:pkc03400]
    PKB_2032 (ligA)
Enzymes [BR:pkc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     PKB_2032 (ligA)
DNA replication proteins [BR:pkc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PKB_2032 (ligA)
DNA repair and recombination proteins [BR:pkc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     PKB_2032 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PKB_2032 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     PKB_2032 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PKB_2032 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT Penicillinase_R
Other DBs
NCBI-ProteinID: CDF83379
UniProt: A0A024HFH0
LinkDB
Position
2095734..2098121
AA seq 795 aa
MTDTQTAAQRIAQLRSELDAHNHRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVSIDS
PTQRVGGAAASAFGEVRHEVPMLSLGNAFLEQDLLDFDRRVREGLADLLPAGDLFGGGAE
VEYSCEPKLDGLAVSLLYENGQLVRGATRGDGTTGEDISANVRTVRNIPLRLQGEGWPAV
LEVRGEVFMSKAGFEALNQRQAEAGAKTFANPRNAAAGSLRQLDPKITASRPLELCAYGF
GRVEGGSLPDTQVGILEAFKSWGVPVSRELKRVQGVGGCQAYYADIGARRDSLAYEIDGV
VFKVNRIDFQRELGFRAREPRWAVAHKFPAREELTELLDVEFQVGRTGAVTPVARLKPVQ
VAGVTVSNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVTERRPADARPVHVPEH
CPVCGSLVERTQLVKRAKGRESVSEGAIYRCVGRLFCQAQLKQSIIHFVSRRAMDIDGLG
DKIVEQLVDKGLVKSPADLYRLRYEQVIELEGFAELSTQNLLNAIADSRKPSLARFIYAL
GIPDVGEETAKLLARALGSLQRIQKALPEVLTYLPDVGGEVAYEIHNFFADEHNRKVIAE
LLDAEHGVHLQEEGEVAAEFAACATLPGFIDKLNIPFIAATGAEKLASRFGSLEGIIRAD
WLDLRQVDRLPERAAKSLREFFDAAGNAERALAIEAQLREFGMHWASEKKVAEGLPLAGQ
TWVLTGTLEAMSRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKAQELSVPVMD
EEGLLKLLAGYGIGA
NT seq 2388 nt   +upstreamnt  +downstreamnt
atgaccgacacccagactgccgcccagcgcatcgcccagcttcgcagtgaactggatgcg
cacaaccaccgctactacgtcctcgacgagccgagcgtgccggacgccgagtacgaccgc
ctgttccgcgaactccaggccctggaggccgagcatccggagctggtgagcatcgactcg
ccgacccagcgcgtcggcggcgctgccgcttcggctttcggcgaagtccgccatgaagtg
cccatgctcagcctgggcaacgccttcctggagcaggacctgctggacttcgaccgtcgc
gtgcgcgaaggcctggccgacctgctgccggccggcgacctgttcggtggcggcgccgag
gtcgagtacagctgcgagcccaagctggacggcctggcggtcagcctgctgtacgagaat
ggccagttggttcggggcgccacgcgcggcgacggcaccactggtgaagacatcagtgcc
aacgtgcgaaccgtgcgcaacattccgctgcgcctgcagggcgaaggctggccggccgta
ctggaagtgcgcggtgaagtgttcatgtccaaggccggtttcgaggcgctcaaccagcgg
caggccgaggcgggcgccaagaccttcgccaacccgcgcaatgccgccgcgggcagcctg
cgccaactcgatccgaaaatcaccgcaagccgcccgctcgagctgtgcgcctacggcttc
ggccgggtcgagggcggcagtctcccggatacccaggtcggcatcctcgaggcgttcaag
tcctggggtgttccggttagtcgcgagctcaagcgcgtgcagggcgtcggcggttgccag
gcttactacgcggatatcggcgcgcgtcgcgacagtctcgcttacgagatcgatggcgtg
gtcttcaaggtcaatcgcatcgacttccagcgcgagctgggcttccgtgcccgcgagccg
cgctgggcggtggctcacaagttcccggcgcgcgaagagcttaccgagttgctggacgtg
gagttccaggtcggtcgtaccggtgccgtcacgccggtggcgcgcctgaagccggtccag
gtggcgggcgtgaccgtgtccaacgccaccttgcacaacatggacgaagttgcgcgcctg
ggcctgatgattggcgataccgtgatcatccgccgcgctggtgatgtcatcccgcaggtc
atgcaggtggtcaccgagcgccgcccggccgatgcgcgcccggttcatgtgcccgagcat
tgcccggtgtgcggctcgctggtcgaacgcacccagttggtcaagcgcgccaaggggcgc
gagtcggtcagcgagggcgccatctaccgctgcgtcggccgcctgttctgccaggcgcag
ctcaagcagtcgatcatccacttcgtctcgcgccgcgccatggacatcgacggcctcggc
gacaagatcgtcgagcaattggtcgacaagggcctggtcaagtcgccggccgatctctac
cgcctgcgctacgagcaggtcatagagctggaaggttttgcagaactgtccacccagaac
ctgctgaatgccattgctgacagtcgcaagccgagcctggcgcgcttcatctacgcgctc
ggcattcccgatgtgggcgaggagactgccaagctgctggcgcgtgccctgggctcgctg
cagcgaatccagaaagcactgccggaagtgctcacctacctgccggatgtcggtggcgaa
gtggcttacgagatccacaacttctttgccgatgaacacaaccgcaaggtgattgccgag
ctcctcgatgccgagcatggcgtgcatctgcaggaggagggcgaggtcgctgcggagttc
gctgcatgcgccacgctgccgggtttcatcgacaagctgaacattcccttcatcgctgcg
acgggtgcggagaagctggccagccgtttcggctcgctcgaaggcatcatccgcgccgat
tggctcgatctgcgccaggtcgatcgtctgcccgaacgtgcagccaagagcctgcgcgag
ttcttcgatgccgccggcaatgccgagcgcgcgctggcgatcgaggcgcagttgcgtgaa
ttcggcatgcactgggcgagcgagaagaaagtcgccgaaggcctgccgctcgctggccag
acctgggtgcttaccggcaccctggaggccatgagccgcgacgtcgccaaggagcatctg
gagagcctcggcgccaaggtggcgggttcggtctcggcgaagacccattgcgtggtcgcg
ggccccggtgccggttcgaaactgaccaaggcgcaggaactcagcgtgccggtaatggac
gaagaagggctgctcaagctgcttgccggatacggcatcggcgcctga

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