Pseudomonas knackmussii: PKB_2032
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Entry
PKB_2032 CDS
T03081
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03030
DNA replication
pkc03410
Base excision repair
pkc03420
Nucleotide excision repair
pkc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PKB_2032 (ligA)
03410 Base excision repair
PKB_2032 (ligA)
03420 Nucleotide excision repair
PKB_2032 (ligA)
03430 Mismatch repair
PKB_2032 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkc03032
]
PKB_2032 (ligA)
03400 DNA repair and recombination proteins [BR:
pkc03400
]
PKB_2032 (ligA)
Enzymes [BR:
pkc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PKB_2032 (ligA)
DNA replication proteins [BR:
pkc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PKB_2032 (ligA)
DNA repair and recombination proteins [BR:
pkc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PKB_2032 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PKB_2032 (ligA)
MMR (mismatch excision repair)
DNA ligase
PKB_2032 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PKB_2032 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Penicillinase_R
Motif
Other DBs
NCBI-ProteinID:
CDF83379
UniProt:
A0A024HFH0
LinkDB
All DBs
Position
2095734..2098121
Genome browser
AA seq
795 aa
AA seq
DB search
MTDTQTAAQRIAQLRSELDAHNHRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVSIDS
PTQRVGGAAASAFGEVRHEVPMLSLGNAFLEQDLLDFDRRVREGLADLLPAGDLFGGGAE
VEYSCEPKLDGLAVSLLYENGQLVRGATRGDGTTGEDISANVRTVRNIPLRLQGEGWPAV
LEVRGEVFMSKAGFEALNQRQAEAGAKTFANPRNAAAGSLRQLDPKITASRPLELCAYGF
GRVEGGSLPDTQVGILEAFKSWGVPVSRELKRVQGVGGCQAYYADIGARRDSLAYEIDGV
VFKVNRIDFQRELGFRAREPRWAVAHKFPAREELTELLDVEFQVGRTGAVTPVARLKPVQ
VAGVTVSNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVTERRPADARPVHVPEH
CPVCGSLVERTQLVKRAKGRESVSEGAIYRCVGRLFCQAQLKQSIIHFVSRRAMDIDGLG
DKIVEQLVDKGLVKSPADLYRLRYEQVIELEGFAELSTQNLLNAIADSRKPSLARFIYAL
GIPDVGEETAKLLARALGSLQRIQKALPEVLTYLPDVGGEVAYEIHNFFADEHNRKVIAE
LLDAEHGVHLQEEGEVAAEFAACATLPGFIDKLNIPFIAATGAEKLASRFGSLEGIIRAD
WLDLRQVDRLPERAAKSLREFFDAAGNAERALAIEAQLREFGMHWASEKKVAEGLPLAGQ
TWVLTGTLEAMSRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKAQELSVPVMD
EEGLLKLLAGYGIGA
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacccagactgccgcccagcgcatcgcccagcttcgcagtgaactggatgcg
cacaaccaccgctactacgtcctcgacgagccgagcgtgccggacgccgagtacgaccgc
ctgttccgcgaactccaggccctggaggccgagcatccggagctggtgagcatcgactcg
ccgacccagcgcgtcggcggcgctgccgcttcggctttcggcgaagtccgccatgaagtg
cccatgctcagcctgggcaacgccttcctggagcaggacctgctggacttcgaccgtcgc
gtgcgcgaaggcctggccgacctgctgccggccggcgacctgttcggtggcggcgccgag
gtcgagtacagctgcgagcccaagctggacggcctggcggtcagcctgctgtacgagaat
ggccagttggttcggggcgccacgcgcggcgacggcaccactggtgaagacatcagtgcc
aacgtgcgaaccgtgcgcaacattccgctgcgcctgcagggcgaaggctggccggccgta
ctggaagtgcgcggtgaagtgttcatgtccaaggccggtttcgaggcgctcaaccagcgg
caggccgaggcgggcgccaagaccttcgccaacccgcgcaatgccgccgcgggcagcctg
cgccaactcgatccgaaaatcaccgcaagccgcccgctcgagctgtgcgcctacggcttc
ggccgggtcgagggcggcagtctcccggatacccaggtcggcatcctcgaggcgttcaag
tcctggggtgttccggttagtcgcgagctcaagcgcgtgcagggcgtcggcggttgccag
gcttactacgcggatatcggcgcgcgtcgcgacagtctcgcttacgagatcgatggcgtg
gtcttcaaggtcaatcgcatcgacttccagcgcgagctgggcttccgtgcccgcgagccg
cgctgggcggtggctcacaagttcccggcgcgcgaagagcttaccgagttgctggacgtg
gagttccaggtcggtcgtaccggtgccgtcacgccggtggcgcgcctgaagccggtccag
gtggcgggcgtgaccgtgtccaacgccaccttgcacaacatggacgaagttgcgcgcctg
ggcctgatgattggcgataccgtgatcatccgccgcgctggtgatgtcatcccgcaggtc
atgcaggtggtcaccgagcgccgcccggccgatgcgcgcccggttcatgtgcccgagcat
tgcccggtgtgcggctcgctggtcgaacgcacccagttggtcaagcgcgccaaggggcgc
gagtcggtcagcgagggcgccatctaccgctgcgtcggccgcctgttctgccaggcgcag
ctcaagcagtcgatcatccacttcgtctcgcgccgcgccatggacatcgacggcctcggc
gacaagatcgtcgagcaattggtcgacaagggcctggtcaagtcgccggccgatctctac
cgcctgcgctacgagcaggtcatagagctggaaggttttgcagaactgtccacccagaac
ctgctgaatgccattgctgacagtcgcaagccgagcctggcgcgcttcatctacgcgctc
ggcattcccgatgtgggcgaggagactgccaagctgctggcgcgtgccctgggctcgctg
cagcgaatccagaaagcactgccggaagtgctcacctacctgccggatgtcggtggcgaa
gtggcttacgagatccacaacttctttgccgatgaacacaaccgcaaggtgattgccgag
ctcctcgatgccgagcatggcgtgcatctgcaggaggagggcgaggtcgctgcggagttc
gctgcatgcgccacgctgccgggtttcatcgacaagctgaacattcccttcatcgctgcg
acgggtgcggagaagctggccagccgtttcggctcgctcgaaggcatcatccgcgccgat
tggctcgatctgcgccaggtcgatcgtctgcccgaacgtgcagccaagagcctgcgcgag
ttcttcgatgccgccggcaatgccgagcgcgcgctggcgatcgaggcgcagttgcgtgaa
ttcggcatgcactgggcgagcgagaagaaagtcgccgaaggcctgccgctcgctggccag
acctgggtgcttaccggcaccctggaggccatgagccgcgacgtcgccaaggagcatctg
gagagcctcggcgccaaggtggcgggttcggtctcggcgaagacccattgcgtggtcgcg
ggccccggtgccggttcgaaactgaccaaggcgcaggaactcagcgtgccggtaatggac
gaagaagggctgctcaagctgcttgccggatacggcatcggcgcctga
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