Plantactinospora sp. KBS50: CIK06_22540
Entry
CIK06_22540 CDS
T05048
Definition
(GenBank) ATP-dependent DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
plk
Plantactinospora sp. KBS50
Pathway
plk03030
DNA replication
plk03410
Base excision repair
plk03420
Nucleotide excision repair
plk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plk00001
]
Genetic Information Processing
Replication and repair
03030 DNA replication
CIK06_22540
03410 Base excision repair
CIK06_22540
03420 Nucleotide excision repair
CIK06_22540
03430 Mismatch repair
CIK06_22540
Enzymes [BR:
plk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CIK06_22540
6.5.1.6 DNA ligase (ATP or NAD+)
CIK06_22540
6.5.1.7 DNA ligase (ATP, ADP or GTP)
CIK06_22540
DNA replication proteins [BR:
plk03032
]
Eukaryotic Type
DNA Replication Elongation Factors
Other elongation factors
CIK06_22540
Prokaryotic Type
Elongation factors (archaeal)
Other elongation factors
CIK06_22540
DNA repair and recombination proteins [BR:
plk03400
]
Eukaryotic Type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
CIK06_22540
NER (nucleotide excision repair)
Other NER factors
CIK06_22540
MMR (mismatch exicision repair)
Other MMR factors
CIK06_22540
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_A_N
RNA_ligase
DUF4213
Other DBs
NCBI-ProteinID:
ASW56337
UniProt:
A0A248YSE0
LinkDB
Position
complement(5246821..5248404)
AA seq
527 aa
MRFLDLAATSAAVTAISGRRAKVDLLAAALRDLRIDEISIGAAYLAGELRQRQTGVGYAS
LRDLPPPAAEPELSVTEVDAAIEELSAVAGSGSQQRRRALLAALFARSTTDEQRMLVGLF
SGELRQGAQAGLLADAVARAAQVPLPLVRRALLMAGDLRAVAVAALTGGAAALGEFSLRV
GRPLAPMLAQSASSVDEALGATGSPAVVDVKLDGIRIQVHRSGNDISVFTRSLDDITVRL
PEVVAAVRALPARELVLDGEAIALDATGRPRPFQETASRAATRGARRRLAAGAASAAPAP
SAPGSGTTTLTPYFFDLLHLDGTDLLDAPGRDRWAALAATVAPALVVGRLEVHSAEEAAS
AFATAIDAGQEGVVIKAPDAPYDAGRRGAAWVKVKPRHTLDLVVLAVEWGSGRRRGWLSN
LHLGARDPDTGGFVMLGKTFKGLTDELLRWQTERFLDLAVERGEWVVRVRPEQVVEIAFD
GVQSSSRYPGGMALRFARVVRYRDDKTAAEADTIDAVRAIHGGRPPG
NT seq
1584 nt
+upstream
nt +downstream
nt
gtgcggttcctcgacctggcggccacctcggccgccgtgactgcgatctccggccggcgg
gccaaggtcgacctgctcgccgccgccctgcgtgacctgcggatcgacgagatcagcatc
ggcgcggcatacctcgcgggcgagctgcggcagcgacagaccggggtgggctacgcgagc
ctgcgcgacctgcccccgccggccgccgagccggagctgagcgtcaccgaggtggacgcg
gcgatcgaagagctgtccgcggtggccggctccggctcgcagcagcgccgccgggcgctg
ctcgcggcgctgttcgcccggtccaccacggacgagcagcggatgctcgttgggctgttc
agcggcgagctgcgccagggcgcccaggccggcctgctggccgacgcggtggcccgggcg
gcgcaggtgccgctgccgctggtccgccgtgccctgctgatggccggagacctgcgtgcc
gtggcggtggccgcgctgaccggcggagccgccgcgctgggcgagttcagcctgcgggtg
gggcggcccctcgcaccgatgctcgcgcagagcgcctcctcggtcgacgaggcgctcggg
gcgaccggcagcccggcggtggtggacgtcaaactcgacggcatccgcatccaggtgcac
cgctccggcaacgacatctcggtcttcacccgcagcctggacgacatcaccgtgcggctg
cccgaggtggtggccgcggtccgcgcgctgccggcccgggagctggtgctggacggcgag
gcgatcgcgctggacgccaccgggcggccccggccgttccaggagaccgccagccgggcc
gccacccgaggcgcccgccgtcggctcgcggccggcgccgccagtgccgcgccggccccg
agcgcccccggcagcggcacgaccacgctcaccccgtacttcttcgacctgctgcacctg
gacggcacggacctgctggacgcgcccggccgggaccggtgggcggcgctcgcggcgacc
gtcgcccccgccctggtggtcgggcggctggaggtgcactccgccgaggaggccgcctcc
gccttcgcgaccgcgatcgacgccggccaggagggcgtggtgatcaaggcgcccgacgcg
ccgtacgacgccggccggcgcggcgcggcatgggtcaaggtgaaaccccggcacaccctg
gatctggtggtgctggccgtcgagtggggcagcggccggcgccgcggctggctgtccaac
ctgcatctgggcgcccgcgacccggacaccggcgggttcgtgatgctgggcaagaccttc
aaggggctgaccgacgagctgttgcggtggcagaccgagcggttcctcgacctggccgtc
gagcgcggcgagtgggtggtccgggtccgccccgaacaggtcgtcgagatcgccttcgac
ggggtgcagagcagcagccggtatccgggcgggatggccctgcggttcgcccgggtggtc
cgctaccgggacgacaagacggccgcggaggccgacacgatcgacgcggtccgggccatc
cacggcggccggccgccgggctga
DBGET
integrated database retrieval system
