KEGG   Plantactinospora sp. KBS50: CIK06_22540Help
Entry
CIK06_22540       CDS       T05048                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
plk  Plantactinospora sp. KBS50
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:plk00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    CIK06_22540
   03410 Base excision repair
    CIK06_22540
   03420 Nucleotide excision repair
    CIK06_22540
   03430 Mismatch repair
    CIK06_22540
Enzymes [BR:plk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CIK06_22540
    6.5.1.6  DNA ligase (ATP or NAD+)
     CIK06_22540
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CIK06_22540
DNA replication proteins [BR:plk03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CIK06_22540
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CIK06_22540
DNA repair and recombination proteins [BR:plk03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CIK06_22540
   NER (nucleotide excision repair)
    Other NER factors
     CIK06_22540
   MMR (mismatch exicision repair)
    Other MMR factors
     CIK06_22540
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
complement(5246821..5248404)
Genome map
AA seq 527 aa AA seqDB search
MRFLDLAATSAAVTAISGRRAKVDLLAAALRDLRIDEISIGAAYLAGELRQRQTGVGYAS
LRDLPPPAAEPELSVTEVDAAIEELSAVAGSGSQQRRRALLAALFARSTTDEQRMLVGLF
SGELRQGAQAGLLADAVARAAQVPLPLVRRALLMAGDLRAVAVAALTGGAAALGEFSLRV
GRPLAPMLAQSASSVDEALGATGSPAVVDVKLDGIRIQVHRSGNDISVFTRSLDDITVRL
PEVVAAVRALPARELVLDGEAIALDATGRPRPFQETASRAATRGARRRLAAGAASAAPAP
SAPGSGTTTLTPYFFDLLHLDGTDLLDAPGRDRWAALAATVAPALVVGRLEVHSAEEAAS
AFATAIDAGQEGVVIKAPDAPYDAGRRGAAWVKVKPRHTLDLVVLAVEWGSGRRRGWLSN
LHLGARDPDTGGFVMLGKTFKGLTDELLRWQTERFLDLAVERGEWVVRVRPEQVVEIAFD
GVQSSSRYPGGMALRFARVVRYRDDKTAAEADTIDAVRAIHGGRPPG
NT seq 1584 nt NT seq  +upstreamnt  +downstreamnt
gtgcggttcctcgacctggcggccacctcggccgccgtgactgcgatctccggccggcgg
gccaaggtcgacctgctcgccgccgccctgcgtgacctgcggatcgacgagatcagcatc
ggcgcggcatacctcgcgggcgagctgcggcagcgacagaccggggtgggctacgcgagc
ctgcgcgacctgcccccgccggccgccgagccggagctgagcgtcaccgaggtggacgcg
gcgatcgaagagctgtccgcggtggccggctccggctcgcagcagcgccgccgggcgctg
ctcgcggcgctgttcgcccggtccaccacggacgagcagcggatgctcgttgggctgttc
agcggcgagctgcgccagggcgcccaggccggcctgctggccgacgcggtggcccgggcg
gcgcaggtgccgctgccgctggtccgccgtgccctgctgatggccggagacctgcgtgcc
gtggcggtggccgcgctgaccggcggagccgccgcgctgggcgagttcagcctgcgggtg
gggcggcccctcgcaccgatgctcgcgcagagcgcctcctcggtcgacgaggcgctcggg
gcgaccggcagcccggcggtggtggacgtcaaactcgacggcatccgcatccaggtgcac
cgctccggcaacgacatctcggtcttcacccgcagcctggacgacatcaccgtgcggctg
cccgaggtggtggccgcggtccgcgcgctgccggcccgggagctggtgctggacggcgag
gcgatcgcgctggacgccaccgggcggccccggccgttccaggagaccgccagccgggcc
gccacccgaggcgcccgccgtcggctcgcggccggcgccgccagtgccgcgccggccccg
agcgcccccggcagcggcacgaccacgctcaccccgtacttcttcgacctgctgcacctg
gacggcacggacctgctggacgcgcccggccgggaccggtgggcggcgctcgcggcgacc
gtcgcccccgccctggtggtcgggcggctggaggtgcactccgccgaggaggccgcctcc
gccttcgcgaccgcgatcgacgccggccaggagggcgtggtgatcaaggcgcccgacgcg
ccgtacgacgccggccggcgcggcgcggcatgggtcaaggtgaaaccccggcacaccctg
gatctggtggtgctggccgtcgagtggggcagcggccggcgccgcggctggctgtccaac
ctgcatctgggcgcccgcgacccggacaccggcgggttcgtgatgctgggcaagaccttc
aaggggctgaccgacgagctgttgcggtggcagaccgagcggttcctcgacctggccgtc
gagcgcggcgagtgggtggtccgggtccgccccgaacaggtcgtcgagatcgccttcgac
ggggtgcagagcagcagccggtatccgggcgggatggccctgcggttcgcccgggtggtc
cgctaccgggacgacaagacggccgcggaggccgacacgatcgacgcggtccgggccatc
cacggcggccggccgccgggctga

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