Planctopirus limnophila: Plim_0893
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Entry
Plim_0893 CDS
T01225
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family
KO
K03086
RNA polymerase primary sigma factor
Organism
plm
Planctopirus limnophila
Pathway
plm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Plim_0893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plm03021
]
Plim_0893
Transcription machinery [BR:
plm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Plim_0893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
SPT16
Knl1_RWD_C
DUF1090
Ald_deCOase
ECH_1
Motif
Other DBs
NCBI-ProteinID:
ADG66737
UniProt:
D5SSI9
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All DBs
Position
complement(1142698..1144431)
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AA seq
577 aa
AA seq
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MDQSQLALRELLNQGASRGFLTYAEIDRYIPDEGGDPALVDELIMALEAAGLDAVEPEGG
IDPLQSLPPLEMLEPESNSSSRDPIRMYLSQMGHIPLLTREREIYLAKQIEMTRRWFRRR
MLESDFAIRIVVDTVHKVRLGELPFERTLRTSDTESVQKDQILARMPHNLPTIERMLDEN
KQDFTLLRAAIGTPEEAVIRERMAIRRSKLATLCEELSVRTQRLQPVMRRMEQISLRMTE
LQKQISARQIRKMPMTAADVAAAEAELEGLIQDVQELPADFQKRIRRVLEKFGGWTRSKQ
QLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEFRRGYKFSTYATWWIRQ
AITRAVADHARTIRIPVHMFQSISTLKNKSEQIRQETGREPTIEELALAVDMSVEDTERI
MKTWKHPMSLDTPIGESEDSSFGDFLEDSHESTPADNALREMLRDKIDIVLRSLTYRERE
IIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALKKLQHHTRAHHLQGFVEDLLPN
PAAPGALLNSDTILSEESKSSPAARRRKDSMTLAAAN
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatcacaactcgcacttcgtgaactgctgaatcagggcgcctcgcgcggcttt
ctgacgtacgcggaaatcgacaggtacatccctgatgaagggggtgatcctgccctcgtt
gacgaactcatcatggcccttgaggctgccggtctcgatgccgttgagcctgagggtggt
attgatccactgcaatcgttgcctccgctggaaatgcttgagccggaatccaactccagc
tcgcgtgatccgattcgcatgtacttgagccagatgggccacatccccctgctgacacgc
gaacgggaaatctacctggccaaacaaatcgaaatgactcgccgctggttccgccgacgc
atgctcgaatccgatttcgcgattcgcattgttgtcgatacggttcacaaagtccggctc
ggggaacttccctttgagcgcacattgcggacttcagataccgaaagcgttcagaaagat
cagattctggctcgtatgcctcacaatctgccgaccattgagcgcatgctcgatgagaac
aagcaggatttcacactccttcgagcagccatcgggactcccgaagaagccgtcattcgc
gaacgcatggccattcgtcgcagcaagctggccaccctctgtgaagaactcagtgtccgc
acacaaaggctccagcctgtcatgcggcgtatggaacagatctcgcttcggatgacagaa
ctccagaagcagatttctgcccgccagattcgcaagatgccgatgacagccgctgacgtg
gctgccgctgaagccgaactggaagggttgattcaggatgtgcaggaactgccagccgat
ttccagaagcgcattcgccgagttctcgaaaaatttggtggctggacacgttccaagcag
cagctttctggcggtaacctcaggctggtggtctcgattgccaagaagtatcgcaaccgg
ggcctgagctttctcgacctgattcaggaaggaaatgccggtctgatgcgtggtgtcgag
aagtacgaattccgccgtggttataagttctccacctacgccacatggtggattcgtcag
gcgattacccgtgccgttgccgatcatgcccggacgattcgtattccagtccacatgttc
caaagcatttccacgctgaagaacaagagcgaacagatccgccaggaaacaggtcgcgag
ccaaccatcgaggagctggcactggccgtcgatatgtcggtcgaagataccgaacgaatc
atgaagacctggaagcacccgatgagtctcgatacaccgatcggtgaaagcgaagactcc
agctttggtgatttcctggaagatagtcacgaatcgactccagccgacaacgccctgcgt
gaaatgctgcgggataagatcgatatcgtgctccgcagcctgacgtatcgcgaacgggaa
atcattcgtttgcgttacggcctgggcgacggctacagctacactctcgaagaaacgggc
cgaatttttaaggtcactcgcgagcgtatccgccagattgaatcgaaggctctcaagaag
ttgcagcaccacacgcgtgctcatcacctgcaaggcttcgtggaagatctccttccgaac
cctgctgcccccggtgcactgctgaactcggatacgattctttctgaagaatcgaaaagt
tcacctgcagcacgtcggcgcaaagactccatgacactcgcggcagccaactga
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