KEGG   Planococcus sp. PAMC 21323: Plano_0024
Entry
Plano_0024        CDS       T03510                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pln  Planococcus sp. PAMC 21323
Pathway
pln03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pln00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Plano_0024
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pln03021]
    Plano_0024
   03400 DNA repair and recombination proteins [BR:pln03400]
    Plano_0024
Enzymes [BR:pln01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Plano_0024
Transcription machinery [BR:pln03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Plano_0024
DNA repair and recombination proteins [BR:pln03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Plano_0024
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AIY03989
UniProt: A0A0B4R7D7
LinkDB
Position
23118..26723
AA seq 1201 aa
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASYVVIDPADTPLEKKQLLSEKEYRAYRDKFGKKFQAAMGAEAIKRLLQ
EIDLERETDSLKEELKTAQGQRRTRAIKRLEVVESFRNSGNNPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKG
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHSEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGATGEGATFSGPEEVMIAYQTGHVHLHTRIAIQ
AGAVNNPTFTEEQNKMLLLTSVGKIIFNEILPKSFPYINEPTDFNLQVETPAKYFVATTT
DIRKHIEEAELVTPFKKKILGEIIAEVFKRFHITETSKMLDRMKSLGFKYSTQAGITVGV
SDIVVLPDKGEILISAQENVDKVMKQFRRGLITEEERYARVISYWSNAKDIIQGKLMASL
DNLNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDAIVRENDCGTDRGLLVGALMEGTEVIEELD
ERIVGRHAKKTIRHPETKEIIVAKDELITQDLTRLIVEAGIKEVTIRSAFTCNTKHGICK
KCYGTNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
ESRNPKGQAVISEITGTVTEIEEIREGQKEVTIQGDVETRKYLAPYNARIKVQVDDAIVR
GEVLTDGSIDPKQLLQVKDVQAVQVYLLKEVQKVYRMQGVEIGDKHVEVMVRQMFRKVRV
IEAGDTELLPGSLLDIHQFTEANVKAVLEGNLPATSRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQIKIAQSEKAAQQEIVGTE
S
NT seq 3606 nt   +upstreamnt  +downstreamnt
ttgatagatgttaataattttgagtatatgaaaatcggattagcgtcacccgataaaatt
cgctcatggtcttatggagaagtcaaaaagccagaaacaatcaattaccgtacattaaaa
cctgaaaaagatggtttgttctgcgaacgaattttcggtcctacaaaggattgggaatgt
cattgcggtaaatacaaacgtgttcgttataaaggcgttgtctgtgatcgttgtggcgtt
gaagttacacgttcaaaagttcgtcgcgagcgcatgggacatattgaattagcagctcct
gtttcacacatttggtatttcaaagggattccgagccgtatgggacttatcttagatatg
tcaccgcgttcacttgaagaagttatttactttgcttcttacgtagtaatcgatcctgcg
gatacaccgcttgaaaagaaacagcttttatctgaaaaagaataccgcgcataccgtgat
aagtttggtaagaaattccaagctgctatgggagcagaagcaatcaaacgtctattacaa
gaaattgaccttgaacgcgaaacggattctttaaaagaagagttgaaaacagctcaaggc
caacgtcgcacacgtgcgatcaaacgtcttgaagtcgtagaatcattccgtaattcagga
aacaatcctgattggatgatcttagatgtgctacctgttattccacctgaacttcgtccg
atggttcaattagacggcggtcgctttgcgacttctgatttaaatgatctttatcgtcgc
gtaatcaaccggaacaaccgtttgaaacgtcttttggaccttggtgcaccaagcattatt
gttcaaaatgagaaacgtatgcttcaagaagctgttgatgctttgattgataatggccgt
cgtggtcgtccggttactggaccaggtaaccgtccgttgaaatctctttctcatatgtta
aaaggtaaacaaggacgtttccgtcaaaaccttcttggtaaacgagtagattattcaggc
cgttcagtaattgttgttggacctaacttgaaaatgtaccaatgtggtttaccaaaagga
atggcaatcgaattgtttaaaccttttgttatgaaggaattggttgaacgtggattggct
cataacatcaagagtgcaaaacgtaaaattgaacgtcttcattctgaagtttgggatgta
ttagaagatgtaatcaaggagcatccggttctattgaaccgagcaccaactcttcacaga
ctaggtatccaggcatttgaaccgacacttgttgaaggtaaagcaatccgtctacatccg
cttgtatgtactgcatacaacgccgattttgatggtgaccaaatggctgttcacgtacct
ttatcatctgaagcacaagctgaagcgagattactaatgcttgcagctcaaaacattttg
aatccaaaagacggaaaacctgttgtaacaccatctcaggatatggttttaggaaactat
tacttaacgcttgagcgtaaaggtgctacaggagaaggcgctactttctcaggacctgaa
gaagtcatgatcgcttatcaaacaggccatgtgcatttgcatacacgtattgcgattcaa
gctggagctgttaacaacccgacgttcacagaagaacaaaacaaaatgcttttattgaca
tctgttggtaaaattattttcaatgaaattctgccgaagtcattcccatatattaatgaa
ccgactgactttaacttgcaggtggaaacaccagcgaaatactttgttgctacaacaacg
gatattcgcaagcatattgaagaagcagaacttgtaacgccatttaaaaagaaaattctt
ggtgagatcatcgcagaagtatttaaacgtttccatattacggaaacttcgaaaatgctt
gatcgcatgaagagccttggatttaaatattcgactcaagccggcatcactgttggtgtg
tcagatattgtagttcttccagacaagggagaaattttaattagcgcgcaagaaaacgtt
gataaagtaatgaaacaattccgccgtggattgattacagaagaagagcgatatgcacgc
gtcatttcatattggagtaatgcaaaagatatcattcaaggtaaactgatggcatctctt
gataacttaaacccaatctttatgatgagtgattccggtgctcgtggtaatgcttccaac
tttacgcagcttgcgggtatgcgtggattgatggccaacccggctggacgtattatcgaa
cttccgattaaatcttctttccgtgaaggattaacagtacttgagtatttcatctctacc
cacggtgctcgtaaaggtcttgccgatacagcattgaaaacggccgattctggttactta
actcgtcgtttagtagatgttgcacaagatgcaatcgtccgcgaaaatgattgtggaaca
gatagaggcttattggttggagcgttgatggaaggtacagaagtaattgaagagcttgat
gagcgtattgttggtcgtcatgctaagaaaacaattcgccatccagaaacaaaagaaatt
attgtagcaaaagacgaattgatcacgcaagacttaactcgtctgattgtagaagcgggt
attaaagaagttaccattcgttctgcatttacatgtaatacaaaacacggtatttgtaag
aaatgttacggcacaaacttagcaactggagacgaagttgaagtgggcgaagcagtaggt
attattgcagctcaatcaatcggtgagccaggaactcagcttacgatgcgtacattccat
acaggtggggttgcaggagacgatattactcaaggtcttccgcgtatccaagaaatattt
gagtcgcgtaatcctaaaggtcaagcggttatttctgaaattacagggacagttactgaa
atcgaagaaattcgcgaaggtcagaaggaagtaacgattcaaggtgatgttgaaacacgt
aaatatctagctccatacaatgcgcgcatcaaagttcaagtagatgacgctattgtacga
ggcgaagtattaacggatggttcaatcgatccgaaacaattacttcaagtaaaagacgtt
caagctgttcaagtttatctattgaaagaagttcaaaaagtataccgtatgcagggtgta
gaaatcggtgataagcacgtagaagttatggttcgtcaaatgttccgtaaagttcgcgta
attgaagccggtgatacagaattgctaccaggttcactattggatattcaccagtttact
gaggctaatgttaaagcggttctagaaggtaacttaccagcgacaagtcgtcctgtaatt
ctagggatcacaaaagcttctcttgaaacagaatcattcttatcagccgcatctttccaa
gaaacgactcgtgtcttaacagacgcagcaatcaaaggaaaacgtgatgagcttctagga
ttgaaagagaacgttattatcggaaaacttgttccagctggaacaggaatgcaacgttac
cgtcaaattaaaattgctcaaagtgaaaaagcggcgcagcaggaaattgtcggtacagaa
tcataa

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