Planococcus sp. PAMC 21323: Plano_0024
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Entry
Plano_0024 CDS
T03510
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pln
Planococcus sp. PAMC 21323
Pathway
pln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Plano_0024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pln03021
]
Plano_0024
03400 DNA repair and recombination proteins [BR:
pln03400
]
Plano_0024
Enzymes [BR:
pln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Plano_0024
Transcription machinery [BR:
pln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Plano_0024
DNA repair and recombination proteins [BR:
pln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Plano_0024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AIY03989
UniProt:
A0A0B4R7D7
LinkDB
All DBs
Position
23118..26723
Genome browser
AA seq
1201 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASYVVIDPADTPLEKKQLLSEKEYRAYRDKFGKKFQAAMGAEAIKRLLQ
EIDLERETDSLKEELKTAQGQRRTRAIKRLEVVESFRNSGNNPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKG
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHSEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGATGEGATFSGPEEVMIAYQTGHVHLHTRIAIQ
AGAVNNPTFTEEQNKMLLLTSVGKIIFNEILPKSFPYINEPTDFNLQVETPAKYFVATTT
DIRKHIEEAELVTPFKKKILGEIIAEVFKRFHITETSKMLDRMKSLGFKYSTQAGITVGV
SDIVVLPDKGEILISAQENVDKVMKQFRRGLITEEERYARVISYWSNAKDIIQGKLMASL
DNLNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDAIVRENDCGTDRGLLVGALMEGTEVIEELD
ERIVGRHAKKTIRHPETKEIIVAKDELITQDLTRLIVEAGIKEVTIRSAFTCNTKHGICK
KCYGTNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
ESRNPKGQAVISEITGTVTEIEEIREGQKEVTIQGDVETRKYLAPYNARIKVQVDDAIVR
GEVLTDGSIDPKQLLQVKDVQAVQVYLLKEVQKVYRMQGVEIGDKHVEVMVRQMFRKVRV
IEAGDTELLPGSLLDIHQFTEANVKAVLEGNLPATSRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQIKIAQSEKAAQQEIVGTE
S
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgttaataattttgagtatatgaaaatcggattagcgtcacccgataaaatt
cgctcatggtcttatggagaagtcaaaaagccagaaacaatcaattaccgtacattaaaa
cctgaaaaagatggtttgttctgcgaacgaattttcggtcctacaaaggattgggaatgt
cattgcggtaaatacaaacgtgttcgttataaaggcgttgtctgtgatcgttgtggcgtt
gaagttacacgttcaaaagttcgtcgcgagcgcatgggacatattgaattagcagctcct
gtttcacacatttggtatttcaaagggattccgagccgtatgggacttatcttagatatg
tcaccgcgttcacttgaagaagttatttactttgcttcttacgtagtaatcgatcctgcg
gatacaccgcttgaaaagaaacagcttttatctgaaaaagaataccgcgcataccgtgat
aagtttggtaagaaattccaagctgctatgggagcagaagcaatcaaacgtctattacaa
gaaattgaccttgaacgcgaaacggattctttaaaagaagagttgaaaacagctcaaggc
caacgtcgcacacgtgcgatcaaacgtcttgaagtcgtagaatcattccgtaattcagga
aacaatcctgattggatgatcttagatgtgctacctgttattccacctgaacttcgtccg
atggttcaattagacggcggtcgctttgcgacttctgatttaaatgatctttatcgtcgc
gtaatcaaccggaacaaccgtttgaaacgtcttttggaccttggtgcaccaagcattatt
gttcaaaatgagaaacgtatgcttcaagaagctgttgatgctttgattgataatggccgt
cgtggtcgtccggttactggaccaggtaaccgtccgttgaaatctctttctcatatgtta
aaaggtaaacaaggacgtttccgtcaaaaccttcttggtaaacgagtagattattcaggc
cgttcagtaattgttgttggacctaacttgaaaatgtaccaatgtggtttaccaaaagga
atggcaatcgaattgtttaaaccttttgttatgaaggaattggttgaacgtggattggct
cataacatcaagagtgcaaaacgtaaaattgaacgtcttcattctgaagtttgggatgta
ttagaagatgtaatcaaggagcatccggttctattgaaccgagcaccaactcttcacaga
ctaggtatccaggcatttgaaccgacacttgttgaaggtaaagcaatccgtctacatccg
cttgtatgtactgcatacaacgccgattttgatggtgaccaaatggctgttcacgtacct
ttatcatctgaagcacaagctgaagcgagattactaatgcttgcagctcaaaacattttg
aatccaaaagacggaaaacctgttgtaacaccatctcaggatatggttttaggaaactat
tacttaacgcttgagcgtaaaggtgctacaggagaaggcgctactttctcaggacctgaa
gaagtcatgatcgcttatcaaacaggccatgtgcatttgcatacacgtattgcgattcaa
gctggagctgttaacaacccgacgttcacagaagaacaaaacaaaatgcttttattgaca
tctgttggtaaaattattttcaatgaaattctgccgaagtcattcccatatattaatgaa
ccgactgactttaacttgcaggtggaaacaccagcgaaatactttgttgctacaacaacg
gatattcgcaagcatattgaagaagcagaacttgtaacgccatttaaaaagaaaattctt
ggtgagatcatcgcagaagtatttaaacgtttccatattacggaaacttcgaaaatgctt
gatcgcatgaagagccttggatttaaatattcgactcaagccggcatcactgttggtgtg
tcagatattgtagttcttccagacaagggagaaattttaattagcgcgcaagaaaacgtt
gataaagtaatgaaacaattccgccgtggattgattacagaagaagagcgatatgcacgc
gtcatttcatattggagtaatgcaaaagatatcattcaaggtaaactgatggcatctctt
gataacttaaacccaatctttatgatgagtgattccggtgctcgtggtaatgcttccaac
tttacgcagcttgcgggtatgcgtggattgatggccaacccggctggacgtattatcgaa
cttccgattaaatcttctttccgtgaaggattaacagtacttgagtatttcatctctacc
cacggtgctcgtaaaggtcttgccgatacagcattgaaaacggccgattctggttactta
actcgtcgtttagtagatgttgcacaagatgcaatcgtccgcgaaaatgattgtggaaca
gatagaggcttattggttggagcgttgatggaaggtacagaagtaattgaagagcttgat
gagcgtattgttggtcgtcatgctaagaaaacaattcgccatccagaaacaaaagaaatt
attgtagcaaaagacgaattgatcacgcaagacttaactcgtctgattgtagaagcgggt
attaaagaagttaccattcgttctgcatttacatgtaatacaaaacacggtatttgtaag
aaatgttacggcacaaacttagcaactggagacgaagttgaagtgggcgaagcagtaggt
attattgcagctcaatcaatcggtgagccaggaactcagcttacgatgcgtacattccat
acaggtggggttgcaggagacgatattactcaaggtcttccgcgtatccaagaaatattt
gagtcgcgtaatcctaaaggtcaagcggttatttctgaaattacagggacagttactgaa
atcgaagaaattcgcgaaggtcagaaggaagtaacgattcaaggtgatgttgaaacacgt
aaatatctagctccatacaatgcgcgcatcaaagttcaagtagatgacgctattgtacga
ggcgaagtattaacggatggttcaatcgatccgaaacaattacttcaagtaaaagacgtt
caagctgttcaagtttatctattgaaagaagttcaaaaagtataccgtatgcagggtgta
gaaatcggtgataagcacgtagaagttatggttcgtcaaatgttccgtaaagttcgcgta
attgaagccggtgatacagaattgctaccaggttcactattggatattcaccagtttact
gaggctaatgttaaagcggttctagaaggtaacttaccagcgacaagtcgtcctgtaatt
ctagggatcacaaaagcttctcttgaaacagaatcattcttatcagccgcatctttccaa
gaaacgactcgtgtcttaacagacgcagcaatcaaaggaaaacgtgatgagcttctagga
ttgaaagagaacgttattatcggaaaacttgttccagctggaacaggaatgcaacgttac
cgtcaaattaaaattgctcaaagtgaaaaagcggcgcagcaggaaattgtcggtacagaa
tcataa
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