KEGG   Prauserella marina: BAY61_28610Help
Entry
BAY61_28610       CDS       T04988                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pmad  Prauserella marina
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pmad00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BAY61_28610
Enzymes [BR:pmad01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BAY61_28610
DNA repair and recombination proteins [BR:pmad03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BAY61_28610
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
6210981..6211886
Genome map
AA seq 301 aa AA seqDB search
MTDSLVDIEGRRLRLSNLDKILYPEVGFTKGEVIDYYARIAPVLLPHVRDRPLTLKRYPN
GVEATSFFEKNVSRHAPDWVRTVRIETPGSSRGAESADYALVQDLPTLVWAAQLASLELH
IPQWTVGPRDGKRDPDLLVFDLDPGPPATIVECCTVAARLREALEADGLTVYPKTSGSKG
MQLYSPVTVGSADRTRTYAKELAEKLEQDDPGLVTSRMARNLRPRKVFIDWSQNNTQKTT
VAPYSLRARALPTVSTPLDWDEVQTCERPDDLVFTADDVLERVRDIGDLFEPLLATDRPR
L
NT seq 906 nt NT seq  +upstreamnt  +downstreamnt
atgacggactccctcgtcgacatcgaaggccgcaggctccgactatccaacttggacaaa
atcctgtacccggaggtgggattcaccaagggcgaggtcatcgactactacgcgcgcatc
gcgcccgtactgcttccgcacgtacgggacagacccctgaccttgaagcgctatcccaac
ggcgtcgaagcgacctcgttcttcgagaagaacgtctcacggcacgcgcccgactgggtg
cgcactgtccgcatcgagactcccggcagctcacgcggcgccgagtcggcggactacgcg
ctcgtccaggacctgccgacgttggtgtgggcagcgcagctcgccagcctcgaactgcat
attccacaatggactgtcggccctcgtgacggaaagcgggatcccgaccttctcgtcttc
gacctcgacccaggaccaccggccaccatcgtggaatgctgcaccgtcgcggcacgactt
cgcgaagcactcgaagccgatgggctcaccgtataccccaagacgagcggatcgaagggc
atgcagctctactctccggtcaccgtcggctcggccgaccggacgaggacctacgccaag
gagctggccgaaaagctggaacaggacgatcccgggctcgtcacctcgcgcatggccaga
aacctgcggccccgcaaggtattcatcgactggagccagaacaacacccagaagaccacc
gtggcgccctattcgcttcgagcccgcgcgctccccaccgtttcgaccccgctcgactgg
gacgaggtccagacgtgcgagcgccccgacgaccttgttttcaccgctgacgacgtgctc
gaacgcgtcagggacatcggcgatctcttcgaaccgctcttggccaccgaccggccccgg
ctttag

DBGET integrated database retrieval system