Pseudomonas mandelii: OU5_5486
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Entry
OU5_5486 CDS
T03626
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pman
Pseudomonas mandelii
Pathway
pman03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pman00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OU5_5486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pman03400
]
OU5_5486
Enzymes [BR:
pman01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OU5_5486
DNA repair and recombination proteins [BR:
pman03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OU5_5486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHZ72565
UniProt:
A0A024EJ15
LinkDB
All DBs
Position
complement(6076502..6079951)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIAALYRLPELSHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGSLIDLFPMGSKLPF
RIDLFDDEIETLRTFDPENQRSIDKVDTVRLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGVGRERFPARELPNL
AIEAKATQPLAALAGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDDQAAEFLTLQYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFEDPKADYATFSAGFP
FEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVSVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEAYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLMRITALKLQAELLGIKKV
DGGPQGGRIEFAAQTPVDPLTLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVEAL
LECLIPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgcccttagcctggccatcgccgaggctgccagcgctgccaagcgcttt
accctgctgctgaccgccgacagccaaagtgccgaacggctggaacaggagctgagtttc
ttcgccccggatttgcctgtgctgcatttcccggactgggaaaccctgccttacgatctg
ttttcaccccaccaggacatcatttcccagcgcatcgcggccttatataggttgccggag
ctgagccatggcgtattggtcgtgccgatcaccaccgcgctgcaccgcctcgcgccgacc
aaattcctgctcggcagcagcctggtgctggacgttggccagaagctcgacgtcgagcaa
atgcgcacccgacttgaagccagtggctatcgctacgtcgacacggtgtacgagcacggc
gagttcacggtgcgcggctcgctgatcgacctgttcccgatgggcagcaaactgcccttc
cgtatcgacttgttcgacgacgaaatcgaaacgctgcgtaccttcgacccggaaaaccag
cgctccatcgataaagtcgacaccgttcgcctgctgcccgcgcgggaattcccgctgcag
aaagatgcggtcacccgcttcaaggcacgctttcgcgagcgtttcgatgtcgacttccgt
cgctgcccgatctttcaagacctgagcagcgggattacaccggccggtatcgagtactac
ctgccgctgttcttcgacgaaacctcgacgctgttcgattacctgccccaggacacacaa
gtgttttccctgccgggcatcgagcaggcggcggaaaacttctggaacgacgtgcgcaat
cgctacgaagaacgccgcgtcgatccgtcccgtcctttattacctccggccgaactgttc
ctgccggtggaagactgctttgcgcgcctgaagaactggccgcgggtagtggccagtcaa
caggacgtggaaaccggcgtcggtcgcgagcgcttcccggcgcgcgaactgccgaacctg
gccatcgaagccaaggccacccagccgttggcggcgctggccggcttcctcgacgagttt
cccgggcgcgtgctgtttaccgcggagtccgcgggtcgtcgtgaagtgctgctggaattg
ctcgaacgcctgaagctgcgaccgaaaaccgtcgacagctggccggactttgtcgcaagc
aaggagcgattggcgatcaccatcgcgccgctcgacgaaggcctggtactcgacgacccg
gccctggcgctggtagccgaaagcccgttgttcggtcagcgggtgatgcaacgtcgtcgc
cgcgaaaaacgcgccgatgccaacaacgatgcagtcatcaagaaccttaccgagttgcgc
gaaggcgcgccggtggtgcatatcgatcacggcgtcggtcgctacctgggtctggcgacc
ctggaaatcgacgatcaggctgccgagttcttgaccctgcaatacgcagagggcgccaag
ctctacgtgccagtggccaacctgcacctgattgctcgctacaccggtagcgacgatgcc
ctggccccgctgcaccgcctcggctcggaaacctggcagaaagccaaacgcaaagccgcc
gagcaagtgcgcgacgtcgcggccgagctgctagacatctatgcccgtcgcgccgctcgc
gagggttatgccttcgaagacccgaaagccgactacgcaaccttcagtgccggtttcccg
ttcgaagaaaccccggatcagcaaaccaccatcgacgccgtccgcgccgacatgctggca
ccaaagccgatggaccgcctggtctgcggcgacgtgggcttcggcaagaccgaagtggcg
atgcgcgcggcgttcattgcggtgcatggcggtcgccaggtggcgatcctggtgccgact
accctgctcgcccagcagcattacaacagcttccgcgaccgcttcgccgactggccggtg
agcgtggaagtgatgagccgcttcaagtcgaccaaggaagtcaacgctgcagtggcggac
ctcgccgaaggcaagatcgacatcgtcatcggcacgcacaagttgctgcaggacgacgtg
aaaatcaaaaacctcgggttggtcatcatcgacgaagagcatcgttttggtgtccgtcaa
aaagaacagctcaaggccctgcgcagtgaagtcgacattcttaccctcaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcattgccacg
ccgccagcccgtcgcctgtcggtgcggactttcgtcatggagcagaacaagagcacggtc
aaagaggccctgctgcgtgagttgctgcgcggcggtcaggtctattacctgcacaacgat
gtgaagaccatcgagaagtgcgccgccgacctcgccgaactggtgccggaagcgcggatc
ggcatcggccacgggcagatgcgcgaacgcgatctcgaacaggtgatgagcgacttttac
cacaagcgcttcaacgtgctgattgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgtgccgacaaatttggcctggcgcagctgcaccaa
ttgcgcggccgcgtcggtcgcagtcaccaccaggcttacgcttatttgctgaccccgcca
cgccagcagatcactcccgacgccgaaaaacgtctggaagcgatcgccaacacccaggac
ctcggcgcaggcttcgtgctcgccaccaacgacctggagatccgtggcgccggcgaactg
ctgggcgatggtcagagcggtcagatccaggcggtcggtttcaccctgtacatggaaatg
ctcgaacgcgcggtgaagtcgatccgcaagggcgaacaaccgaaccttgatcaaccgctg
ggcggtggtccggaggtcaatctgcgcgtcccggcgttgattcccgaagcctacttgccg
gacgtgcatgcccgactgattctctacaaacgcattgcctcggccaccgatgaggaaggc
ctcaaagacctgcaagtggagatgatcgaccgtttcggcctgctgccggaaccgacgaag
aacctgatgcgcatcacggcattgaagctgcaagccgaactgctgggcatcaagaaagtc
gacggtggcccgcaaggcggccggatcgagttcgccgcgcagacgccggtcgacccgctg
accctgatcaaactgatccagggccagcccaaacgctacaaattcgaaggtgccacgatg
tttaaattcatggtcccgatggagcgcccggaagagcgctttaatactgtagaggcgctg
cttgagtgcctcattccgaaaactgcttga
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integrated database retrieval system
