Pseudomonas mendocina NK-01: MDS_0097
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Entry
MDS_0097 CDS
T01473
Name
(GenBank) RNA polymerase sigma factor FecI
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pmk
Pseudomonas mendocina NK-01
Pathway
pmk02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MDS_0097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmk03021
]
MDS_0097
Transcription machinery [BR:
pmk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MDS_0097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
GerE
HTH_24
HTH_29
HTH_28
HTH_Tnp_4
HTH_11
HTH_3
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AEB56128
LinkDB
All DBs
Position
112224..112730
Genome browser
AA seq
168 aa
AA seq
DB search
MSADVQVLHTLYRDHHSWLQGWLRRRLGNGCDAADLAQDTFVRLLRAGNAASIREPRDYL
ATVARGLMVDFLRRRSLEQAYLEAMALQPQAEQPSAEQQALLLEALMEVDRMLAGLGRNV
REVFILSQLDGLTYAQIAARLGISLRSVNSYMARAVEHCCLLQAGWQS
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgacgtccaggtgctgcacaccctctatcgcgatcaccatagctggctgcaa
ggctggctgcggcggcgcctgggcaacggctgcgatgccgcagacctggcccaggacacc
ttcgtgcgcctgttgcgagccggcaatgccgcgagcatccgcgagccgcgtgactatctg
gccaccgttgcgcgcggcttgatggtcgacttcctgcgccggcgctcgctggagcaggcc
tacctcgaggcaatggccttgcagccgcaggccgaacaacccagcgccgagcagcaggcg
ttgttgctggaagcgctgatggaggtcgaccgtatgcttgcagggctcggccggaacgtg
cgcgaggtgttcatcctctcccagctcgacggcctcacctacgcgcagatcgccgcccgc
ctgggcatttccctgcgtagcgtgaacagctacatggctcgcgcggtcgagcactgctgc
ctactgcaggccggctggcaatcgtga
DBGET
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