Prochlorococcus marinus subsp. pastoris CCMP1986: PMM0436
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Entry
PMM0436 CDS
T00142
Symbol
topA
Name
(GenBank) Prokaryotic DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmm
Prochlorococcus marinus subsp. pastoris CCMP1986
Brite
KEGG Orthology (KO) [BR:
pmm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmm03032
]
PMM0436 (topA)
03400 DNA repair and recombination proteins [BR:
pmm03400
]
PMM0436 (topA)
Enzymes [BR:
pmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PMM0436 (topA)
DNA replication proteins [BR:
pmm03032
]
Prokaryotic type
DNA Topoisomerases
PMM0436 (topA)
DNA repair and recombination proteins [BR:
pmm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PMM0436 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
DUF6429
Motif
Other DBs
NCBI-ProteinID:
CAE18895
UniProt:
Q7V2N7
LinkDB
All DBs
Position
414484..417096
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AA seq
870 aa
AA seq
DB search
MDHTLVIVESPTKAKTIRRFLPPNYEVLASMGHVRDLPKGAAEIPASVKKEKWSRIGVNT
TEDFEPLYIVPKEKKKVVKDLKNALKDATQLLLATDEDREGESISWHLMQILKPKIPTKR
MVFHEITKKAINKALDETREIDMELVQAQETRRILDRLFGYELSPLLWKKVAPRLSAGRV
QSVSVRLLVNKERERRAFKKASYWGLKATLLKDNISFESKLFSLNAQKISNGSDFDEKTG
NLKKGNKSLILNEDRAKSLLKTLSKEKWKVLRVEKKPTIRKPVPPFTTSTLQQEANRKLR
LSARETMRCAQGLYEKGFITYMRTDSVHLSEQAIRAARECVNSKYGKEYLSSSARQFNSN
ARNAQEAHEAIRPAGEVFKTPNDTDLSGRDLSLYELIWKRTVASQMAEAKLTMINAEIEV
GEGLFKSSGKSIDFAGFFRAYVEGSDDPSASLEQQEVILPDLTQGSVLEVDSKEATYHET
KSPARYTEAALVKVLEKEGIGRPSTYASIIGTIVDRGYANISSNSLSPTFTAFAVTALLE
EHFPDLVDTTFTAKMESSLDEISSGNLEWLPYLETFYKGKNGLEVKVQKTEGDIDGKAYR
QVDFDDLPCVVRIGSNGPWLEGVKIDESGNEIQAKGNLPMDITPGDLDKKKVDQILSGPS
DLGTDPKTGEQVFLRFGPYGPYVQLGNTEEDKAKPRRASLPKELKTDDLTLLEALELLSL
PKLLGEHPEGGIVEADRGRFGPYIKWIKNEDESENRSLKKEDDVFKVDLKRALEILAMPK
LGRGGQEVIKDFGKPKELKDKIQILNGRYGLYIKCGKTNVSLPKDTDLEKFTLDNALVLL
EEKMKDKNSSVFKKNKVISKKTLKNKKSKK
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
ttggatcacacacttgttattgttgaaagtcccacaaaggcaaaaactataagaaggttt
ttgccccctaattatgaagttcttgcttccatgggacatgtaagagatcttcccaaagga
gcagctgaaattcctgcatcagttaaaaaagagaaatggtcaagaataggtgtaaacact
acagaagattttgaaccactttatatcgtcccaaaggaaaagaagaaggtcgttaaagat
ttaaaaaatgctttaaaagatgctactcaattgctattggcaactgatgaagatagggaa
ggagaaagtataagttggcacttaatgcaaattcttaaaccgaaaatcccaactaagcga
atggtttttcatgaaatcactaaaaaggcaattaataaggcattagatgagaccagagaa
attgatatggaattagttcaagctcaagaaactagaagaattcttgataggctttttggg
tatgaactttctccattactttggaaaaaagtagctcccagactatctgctggccgtgtt
cagtctgtttcagtaagattgcttgttaacaaggaaagagaaaggagagcgtttaaaaaa
gcctcttactggggattaaaagccactttgcttaaagataatatttcttttgaatctaag
ttatttagtctaaatgcccagaaaatctctaacggttctgattttgatgaaaagacaggt
aacttaaaaaaaggtaataaatctttaatcttgaacgaagacagagcaaagagtcttctc
aaaactttatctaaggaaaagtggaaagtcttaagagtagaaaaaaaaccaacaattagg
aagcctgttccaccttttactactagtactttgcaacaggaagctaatcgaaaacttcga
ctatctgcaagagaaacaatgagatgcgctcaaggcttatatgagaaaggttttattaca
tatatgagaactgattcagtacatctttctgaacaagcgattagagcggcgagagaatgt
gtaaattcaaaatatgggaaagaatatttatcaagctcagctcgtcaatttaattcaaat
gctaggaatgctcaagaagcacatgaagctatcaggccggctggagaagtatttaaaact
ccaaatgatacagacttgtcaggaagagatctctctttatatgaattaatttggaaaaga
actgttgccagtcaaatggcggaagcaaaattaacaatgattaatgctgaaatagaagtt
ggggaaggattatttaagtcaagcggaaaaagtattgattttgcaggtttttttagagct
tatgtagaaggtagtgatgatccaagcgcatcactagaacagcaagaagtcattcttcct
gatttaactcaagggtctgttctagaagttgatagcaaagaggctacttatcatgaaacc
aaatcaccagctagatatactgaggctgcattagtcaaagttttagaaaaagagggaata
ggaagaccttctacttatgcaagtattattggaacaattgtagataggggctatgcaaat
atttcttcaaattccttgtcgcctacattcacagcttttgctgttacggcattattagag
gaacactttcctgatcttgttgatactacatttacggcaaaaatggaatcttcattggac
gaaatttcttcaggtaatcttgagtggcttccatatttagaaactttttataaaggtaaa
aatggtcttgaggtaaaagttcagaaaactgagggtgatattgatggaaaagcatacaga
caagttgattttgatgacttaccttgcgtagtcagaattggttctaatggcccatggctt
gaaggggtaaaaatagatgaatcaggaaatgaaatacaggcaaaaggtaatctccctatg
gatattactcctggagatttagataaaaagaaagttgatcaaattcttagtggcccctca
gatctaggaactgatccaaaaactggagagcaagtatttttaagattcggcccttatgga
ccttacgttcaattaggaaatactgaagaagacaaagcgaagccaagaagagcctcttta
ccaaaagagttaaaaactgatgacttaactttattggaagcactagaactattaagctta
ccaaaattgttaggagaacatccagaaggtggaattgttgaggcagataggggaagattt
ggtccatatattaaatggataaaaaatgaagatgagtctgaaaatagatctttaaaaaaa
gaagatgatgtttttaaggttgatcttaagcgcgcattagaaatcctcgcgatgccaaaa
ttaggtagaggaggacaagaagtaataaaggatttcggaaaacctaaagagttaaaagat
aaaattcagattttaaatggaagatatggactatatataaagtgtggaaaaacaaacgtt
tctttacctaaagatactgatttagaaaaatttacacttgataatgctttggttttatta
gaagagaaaatgaaagataaaaatagctctgttttcaaaaaaaataaagtaattagtaaa
aagaccttaaagaataaaaaaagtaaaaaataa
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