Prochlorococcus marinus subsp. pastoris CCMP1986: PMM0839
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Entry
PMM0839 CDS
T00142
Name
(GenBank) Transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmm
Prochlorococcus marinus subsp. pastoris CCMP1986
Pathway
pmm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PMM0839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmm03400
]
PMM0839
Enzymes [BR:
pmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PMM0839
DNA repair and recombination proteins [BR:
pmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PMM0839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAE19298
UniProt:
Q7V1M5
LinkDB
All DBs
Position
complement(795015..798530)
Genome browser
AA seq
1171 aa
AA seq
DB search
MSLNSLISYISNSQIIIELVKRIKHNNELNIIGSSRYAKSIIINSIANKENKDILLISPN
EEIAYKWYGYFDSIDNRNVLYYPPSENLPYASINRSKETEYSQLSVISKIIKKERKELNI
IITTERSLQPHLIKINQFKENIFTLIKGNELDIKELTKKLVLLGYNKENLTSQEGSWSRR
GEIIDIYPVNNELPVRIEYFDNIIDKIREYDPVSQRTLDSVNKVEIVQVGFNLLIRKSLE
NLSEQGTFNSEEITTKNNLDRYLGVIEEHPSNLLDYINKETLIVIDEKEECNKFSNNWCL
ESDNNFELHKDEIANNLKSNNINIKVKSNLHEKFESIIKTFSNYNVINLYEFESKRNLDN
RFLLSDKRINTSSKHIGKLSKEINKFILNKDKVWILSAQPLRTKSLFFEHECNTTYLDKP
NDLESAHKLIENSTPVIIKNKNNYEIEGFYLPIWKVILITDKELFSQQALFNNVFIRKRK
RSVNSNINVNKINPGDYIVHKNHGIGQFLKIEKINITGESRDYLVIRYLDGKISVAADQL
GSINRYRSSGKIKPRINKLGGTEWLKIKDKNRKIIKKVALDILKLYAKREKLKGHIFPED
GPWQKELEESFPYQATPDQITAVKEVKIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAI
TSGKQVILLAPTTILAQQHWRTFYNRFSPYPIKVSLLNRFKTNTEKKDIYNGLKNNKIDL
VVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYMS
LSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGGQIFYVLPRISDIDQAV
NKLKNMFKDLKYIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPRVNTIVIE
DSHKFGLSQLYQLRGRVGRSGIQAHAWLFYPNINKINEASKQRLKAIKDFSELGSGYQLA
MKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEVPEVNDTQVDLPINAF
IPGTWILNREEKLDAYKYATECTNHKELTELATDWTNRYGVLPKPVESLILLMKLKLLAK
KCGFNKIKLKKPNVIIETRLKNSTFKLIKKGLPSNIQSKFNYEEDDQFSKIIIRGLGVTD
IQNQIDQLIYWLGLFVKEINNFDKETSVTKI
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaaattcattaattagttatatttcaaattcacaaataataatagagttagta
aaaagaattaaacataataatgaactaaacatcattggctccagtagatatgcaaaatca
attattataaatagtattgctaataaagaaaataaagatatcttacttataagtcctaac
gaggaaattgcctacaaatggtatggatatttcgatagtatagataatagaaatgtatta
tattatcctccaagtgaaaatttgccatatgcttcaattaacaggtcaaaggagactgaa
tattcacagttatcagttatctctaaaattattaaaaaagaaagaaaagaattaaacata
ataataacaactgaacgatccctacaacctcatttaattaaaattaatcaatttaaggaa
aatatatttacactaattaagggaaatgaactagacataaaagagttaacaaaaaagtta
gttttactcggctataataaagaaaatttaacttcgcaagaagggtcatggagtagaaga
ggagaaattattgatatttatccagttaataatgaactgcctgtaagaatagaatacttt
gataatattattgataaaatacgagaatatgatccagtatcacaaagaacattagatagt
gttaataaggttgaaattgtacaagtcggctttaatttattaataagaaaaagcttagaa
aatttatcagaacaaggtacatttaattcagaagaaataacaactaagaataatcttgat
agatacttgggggtaattgaggaacatccatcaaacctattagattacataaataaagaa
acattaattgtcatcgacgaaaaagaggaatgtaataaattttctaataattggtgtctt
gaatcagataataattttgaactacataaagatgaaatcgccaacaacttaaaatctaat
aatataaatataaaagttaaatctaatcttcacgaaaaatttgaatcaattataaaaact
tttagtaattataatgtaataaatttatatgaattcgagtcaaaaagaaatttagataat
agatttcttttgtcagataaacgcattaatacctcttctaaacatattggcaaactttca
aaagaaataaataaatttatattaaataaagataaagtctggatattatcagcgcagcca
ctacgaacaaaaagtttattttttgagcatgaatgtaatacaacttacttagacaaaccc
aacgatcttgaaagcgcgcataagttaattgaaaattcgacaccagtaattattaaaaat
aaaaataattatgaaatagaaggattttatttgccgatatggaaagtaattctaataaca
gacaaagaattattttctcagcaagctttatttaataatgtatttataagaaaaagaaaa
aggagtgtaaattcaaatataaatgtaaataaaataaatccaggagattatatagttcat
aaaaaccatggtattggacaatttttaaaaatagaaaaaataaacattaccggtgaatca
agagactacttagtcattcgttatcttgatggaaaaataagcgttgcagctgatcaactt
gggagtataaacagatatagatctagtggaaaaataaagcctagaataaataaattagga
ggcacagaatggttaaaaataaaagataaaaatagaaaaataataaaaaaagttgcctta
gacattttaaaactttacgcaaaaagggaaaaacttaaaggtcatatattcccagaagat
gggccttggcaaaaagagttagaagagtcattcccttatcaagctactccagatcaaata
acagctgttaaagaagtaaaaattgatatggaaagcgataagccaatggatagattagtt
tgtggagacgtcgggttcggaaaaacagaagtagccgtaagagcaatttttaaagcaatt
acatctggtaagcaggtaatcttacttgctccaacaacaattttagctcaacaacactgg
agaactttttataatagattttctccttacccaataaaagtttctctactgaacagattt
aaaacaaatactgagaaaaaagatatttataatggtttaaaaaataataaaattgactta
gttgtagctactcatcaaattttaggaaaagagatcgaaattaaaaacttaggattactt
gttattgacgaagaacaaagatttggagttaggcaaaaagaaaaaataaaaaatataaaa
acaaatattgacgttttaactctttcagccacaccaatcccaagaactctgtatatgagt
ttgtctggccttagacaaatgagtttattaaatactccaccgccatctagaagatcgatt
aaaacgtatttatctgaaattgatatggatgtaatcagaactgcgataagtcaagaactt
gatagaggtggtcaaattttctatgttcttccaagaatatctgatattgatcaagcggtt
aataaattaaaaaatatgtttaaagatttaaagtacattgtcgctcatggacagatgaat
gaaatagatcttgaaaatgcaatgattgcatttaataatggcgaggttgatctaatgatt
tgcactacaattattgaaagcggattagatatacctagagtaaacacaatcgtaatcgaa
gattcacataaatttggtctttcacaactttatcaattacgtggaagagtcggaagaagt
ggaatacaagctcatgcatggctattttatccaaatataaacaaaattaatgaagcctct
aagcaaaggttaaaggctataaaagatttctctgaactaggaagtggatatcaactagcc
atgaaagatatggaaataagaggtgttgggagcttattaggcgaagagcaaagtggaaaa
gttaatgccataggatatgacttatatattgaaatgcttcatgaagcaatctcagaaata
aatggtcaagaagtaccagaagtcaatgatacgcaagttgatttgccaattaatgctttt
ataccaggaacatggatattaaaccgagaagagaaactagatgcttataaatatgctacc
gaatgtaccaatcacaaagagcttacagagctagcaactgactggacaaataggtatgga
gttttacccaaacctgtagaatccttaatattgttaatgaagttaaaattgttagcaaaa
aagtgtggctttaataaaattaaacttaaaaaaccaaatgtaataatagaaactaggcta
aaaaactctacattcaaacttattaaaaaaggtttaccatcaaatattcaatcaaaattt
aattatgaagaagatgatcagttctcaaaaataattattagaggattaggtgtcacagat
attcaaaatcaaattgatcagttaatctattggttaggactttttgtaaaagaaataaat
aactttgataaagaaacttccgttacaaagatctaa
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