KEGG   Pseudomonas mosselii: O165_009385Help
Entry
O165_009385       CDS       T03276                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pmos  Pseudomonas mosselii
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pmos00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    O165_009385 (ligD)
Enzymes [BR:pmos01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     O165_009385 (ligD)
DNA repair and recombination proteins [BR:pmos03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     O165_009385 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(1962621..1965215)
Genome map
AA seq 864 aa AA seqDB search
MEKKLEKYNKMRDFKESPEPAGLTKSSRRKGKAHALQFCIQKHDASRLHYDFRLELDGTL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGMWIPLGDP
VEAYAKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDSSARPEDIYDVVVAEPD
SVISERAIVAKSPNTSITAKAKPTKKAAEPVRQTKLSPLTGARKAKLPGYIKPQLATLVE
KPPSGRWIYECKFDGFRMLARIEDQKVRLFTRNGHDWTHKLPRQAKALLSLGLNSAWLDG
EIVVIDDQGIPDFQALQNAFEAGQSGNIFYYLFDLPYFNGVDLREVPVEERRAALLAILK
SGKEPLLRFSEAFIEDPNDLLTSACHMQLEGLIGKRLGSSYASGRSSDWIKLKCKRRQEF
IIVGFTDPTGSRNAFGALLLGLHDRDSGELRYVGKVGTGFTEATLKSIHDRIKPLRTKKP
AVANPPRSAELTRVHWLKPQLLAEVAYAEMTKDGSVRHAVFHGLRDDKPASDITVEQPTI
IKNIHGKNIDAKASSAKKKAPTAPSQINSEHSKIHITHPDRVIDATSGTTKVQLAEYYAS
VAEWILPQLKDRPVALVRAPDGITGELFFQKNAERLKVPGIISLDHKLTGQPMMVINNVE
TLIGAVQINTVELHTWNATSDHLDKPDRFVLDLDPDPALPWKSMVEATQLTLTVLDELGL
KAFLKTSGGKGIHLVVPLTRKHGWDEVKNFSHAIVSHMAKMLPERFSAVSGPKNRVGRIF
IDYLRNGLGATTICAYAARTREGLPVSVPIFREEVKELKGGNLWNIQNVLGRLAEVGNEP
WADIKKTRQTITAEMRRRVGMKKL
NT seq 2595 nt NT seq  +upstreamnt  +downstreamnt
atggaaaagaagctcgaaaaatacaacaaaatgcgtgatttcaaggagagtccagagcct
gctggcctcacaaaatctagcaggcgcaagggcaaagcgcatgcattgcagttttgcatt
cagaagcatgatgcctcgcgcttgcattacgactttcgcttagagttggacggtacgctc
aagagttgggcggtaccaaaggggccgtcactggatcccaaggtcaagcgcctggcggtg
catgtcgaagaccatccgctggattacgctaccttcgaaggcagcatacccgaaggccac
tatggtgctggcgacgtcatcgtctgggaccgcggcatgtggattcctctgggcgacccg
gtcgaggcctacgcaaagggccgcctcaagtttgaactgcagggcgagaagctgagcggt
ctatggaacctggttcgcacgcacatgccgggcaagcaggagcaatggtttcttatcaag
catcaagacagttccgctcggcctgaagatatttacgacgtggttgtcgccgaacccgac
agcgtgatcagcgaacgggcaatcgttgccaaatcacccaacacatcaattacagccaag
gccaagcccaccaagaaagctgcagagcctgtacggcaaacaaagctctcgccactcacc
ggtgcgcgcaaggcgaaactgccgggctacatcaagccgcagctggcgactctggtggaa
aagcctcctagcggtcgatggatctatgagtgcaaattcgatggttttaggatgcttgcc
aggatagaagatcaaaaggttcgactctttacacgaaacgggcacgactggacccacaaa
ttgccaaggcaggccaaggcattgctttccttaggattgaattcagcttggctagacggt
gaaattgtggtcatcgacgaccaaggcataccggattttcaggccttgcaaaacgctttc
gaggcaggccagagtggcaatatcttctattacttgttcgatctgccctatttcaatggc
gtggacctgcgcgaggtgccggtcgaggaacgccgggctgcgctcttggcgatcctaaag
tccggcaaagagcccctactgcgtttttccgaggccttcatcgaagaccctaatgacttg
ctcaccagcgcctgtcatatgcagttggagggtctgatcggcaagcgcctcggctcgtcc
tacgcttctgggcgcagcagtgactggattaaactcaagtgtaagcgtcgccaggaattc
atcatcgttggcttcaccgatcccacaggctcacgcaatgcattcggcgccctgctcctg
gggctgcatgatcgagacagcggtgagttgcgctacgtcggcaaagtcggcaccgggttt
acggaggcgactctcaagagcatccatgatcgaatcaagcctctccgaaccaagaaacct
gcagtggctaacccgcccagaagtgcagagctcactcgtgtgcattggcttaaaccgcag
ttgctggcagaagtggcctatgccgaaatgaccaaggacggctcggtgcgtcatgcggtg
ttccatggccttcgtgatgacaagcctgccagcgacatcacggtggagcagccgactatc
attaaaaatatccatgggaaaaatatcgatgccaaagcttcctcagccaagaagaaggcc
ccgactgcgccgtctcagatcaattctgaacatagcaagatacacatcacccacccggat
cgcgtcattgacgctaccagcggcacaaccaaagtccaactcgcggaatattacgcaagc
gtggccgagtggattctcccgcagctcaaggaccgccctgtagctttagtgcgagcgcct
gatggaattaccggagaactgtttttccagaagaacgccgagcgccttaaggttcccggc
atcatctccctcgatcataaactcacgggccagccaatgatggtcattaacaacgtcgag
accttaataggggcggtgcagatcaacacagtcgagctacatacctggaacgccacctcg
gaccatctcgacaaacctgaccgcttcgtccttgacctcgacccggacccggcgctgcca
tggaaaagtatggtcgaagccacccagctgacactcacagtgctcgatgagttggggctc
aaggcgttcctcaagactagcggcggtaagggaattcacttggtggtaccgctgacccgc
aagcatggctgggatgaggtcaagaacttcagccacgctatcgtcagccacatggctaaa
atgctgcctgagcgattttccgcagtatcagggccgaaaaaccgtgtcgggcggatcttc
atcgattacctgcgcaacggattgggcgcgaccacgatctgcgcctacgcagcgcggacc
cgcgaggggctgcctgtgtcggttccgatatttcgagaagaagtgaaggagcttaagggc
ggtaacctgtggaacatacaaaatgtgcttgggcgattggctgaagtaggcaatgaacct
tgggcggacataaagaaaacccggcagacgattactgccgagatgcgccggcgggtgggc
atgaagaagctctga

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