Pasteurella multocida subsp. multocida Pm70: PM1736
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Entry
PM1736 CDS
T00046
Symbol
rpoC
Name
(GenBank) RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmu
Pasteurella multocida subsp. multocida Pm70
Pathway
pmu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PM1736 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmu03021
]
PM1736 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmu03400
]
PM1736 (rpoC)
Enzymes [BR:
pmu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PM1736 (rpoC)
Transcription machinery [BR:
pmu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PM1736 (rpoC)
DNA repair and recombination proteins [BR:
pmu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PM1736 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AAK03820
UniProt:
Q9CK92
LinkDB
All DBs
Position
complement(1952228..1956481)
Genome browser
AA seq
1417 aa
AA seq
DB search
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFESYIVIEPGMTDLDKGQLLTEEQYIDAEDRWGDEFDAK
MGAEAIQALLRDMDLPQECENLREELQETNSETKRKKITKRLKLLEAFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGFASTIKAAKKMVEREDAIVWDILADVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNGKGEGMLLQDPREAEKAYRT
GQVELHSRVKVRITEYVKNAVGEFEPQTNLVDTTIGRAILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGMKPSVLFADQIMYTGFAYAARSGSSVGIDDMVIPAKKYEIISAAED
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGQPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTEEVLIARNTLLDEKLCDVIDSNSVDSIKVRSVVTCNTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNTGTLR
LANVKFVTNNEGKLVLTSRNTELTIIDAFGRTKEHYKVPYGAILSKGDGQEVTAGETVAN
WDPHTMPVVSEVSGFVKFIDLIDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPAIK
LVDAKGNDILIPGTDVVAQYFLPGKAIVTLDDNAEVHIGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPAEGETYEEMIPKWRQLNVFE
GEMVERGDLISDGAETPHDILRLRGVHAVTEYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGIVTKAYDSEFLEGEQVEVARVKIVNRKREAEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRQKKVVMSDEMP
VKLSAADEEEIAAEFTVTAEDATASLAEMLNMADDAE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacaatcaaaaacaagtgaagattttgatgtg
atcaaaattggtttagcctcaccggacatgatccgttcttggtcatttggtgaagttaaa
aaacctgaaaccattaactaccgcacctttaaaccagagcgtgacggtcttttctgtgca
cgtattttcggaccagtaaaagattacgaatgtttatgtggtaaatacaaacgcttaaaa
caccgtggtgtgatctgtgaaaaatgtggtgtggaagtcactcaaaccaaagtacgtcgt
gagcgtatgggtcacattgaacttgcctcacccgtggcgcacatttggttcttaaaatca
ctgccgtcccgtatcggtttattacttgatatgccattacgtgatatcgaacgcgtttta
tatttcgaatcttatattgtgatcgagccgggaatgacggatctcgataaaggtcagtta
ttaaccgaagaacaatatatcgatgcggaagatcgttggggcgatgaatttgacgcgaaa
atgggggcggaagctatccaagccttattgcgcgatatggatttaccgcaagaatgtgaa
aacttacgtgaagaattacaagaaacgaactcagaaaccaaacgtaagaaaatcaccaaa
cgtttaaaactgttagaagcctttattcaatcgggtaacaagcctgaatggatggtaatg
accgtattaccagtattaccaccagatttacgtccattagtgccactcgatggtggtcgt
tttgcgacctcagatttgaacgatttataccgtcgtgtgatcaaccgtaacaaccgttta
aaacgtcttttagacttaatcgcaccagatatcatcgtgcgtaacgaaaaacgtatgtta
caagaatcagtagatgcgttattagataacggtcgtcgtggtcgtgctattactggctct
aaccgtcgtccattaaaatcacttgcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaacctattaggtaaacgtgttgactattcaggtcgttcggtaatcaccgtaggacca
tatttgcacctacatcaatgtggtttaccgaaaaaaatggcattggaattattccgtccg
tttatctatgcaaaattagaaagccgtggcttcgcttcaactattaaagccgcgaagaaa
atggttgagcgtgaagatgcgatcgtatgggatatcttagcggacgtaattcgcgagcac
ccaattttattaaaccgtgcaccaacgttgcaccgtttgggtatccaagcctttgaacct
ttattgatcgaaggtaaagcgatccagttacacccacttgtttgtgcggcgttcaacgcg
gacttcgacggtgaccaaatggcggttcacgtgccattgacattagaagcacagttagaa
gcgcgtgcattaatgatgtcaaccaacaacattttatcacctgcaaacggtgagccgatt
atcgttccttcacaagacgtggtattaggtctttactatatgacccgtgataaagtgaac
ggtaaaggtgaaggcatgttgttacaagacccacgtgaagcggaaaaagcgtatcgcacc
ggtcaagtcgaattacattctcgtgtcaaagtgcgtatcacagaatacgtgaaaaatgcg
gtaggcgagtttgagccacaaactaacttagtggatacgaccattggtcgtgcgattctt
tggatgatcgcaccaaaaggaatgccatttagcttatttaaccaaaccttaggtaaaaag
gcgatttctaagttaatcaacgagagctatcgtcgcttagggatgaaaccaagcgtcttg
tttgcggaccaaatcatgtacaccggttttgcgtatgcggcacgttctggttcttctgta
ggtatcgatgacatggtcattcctgccaagaaatacgaaattatttctgcagcagaagac
gaagtagcggaaatccaagagcagttccaatcaggtttagtgacagcgggcgaacgttat
aacaaagtgatcgatatttgggcggcagcaaacgaacgtgttgcgaaagccatgatggaa
aacctatcgactgaagaagtgatcaaccgtgaaggtcaaccagagaaacaagcctctttc
aacagtatctttatgatggcggactcgggtgcgcgtggttctgcggcacagattcgtcag
ttagcgggtatgcgtggtttgatggcgcgtccagatggttcgatcattgaaacaccaatt
accgcaaacttccgtgaaggtctaaacgtattacagtactttatttcaacccacggtgcg
cgtaaaggtcttgcggatacggcattaaaaacagcgaactccggttacttaacccgtcgt
ttagtggacgtggcacaagatttagtgatcatcgaagatgactgtggtacacacgaaggt
atcgtgatgaccccattaatcgaaggtggtgatgtgaaagaagcactacgtgatcgtgta
ttaggtcgtgtggtggcagaagacgtgttgaaaccaggcacagaagaagtgttgattgca
cgcaataccttattagatgagaaattgtgtgatgtgatcgacagtaattctgtggatagc
atcaaagtgcgctccgttgtaacctgtaacacagacttcggtgtgtgtgccaaatgttat
ggacgtgatcttgcacgtggtcacttaatcaaccaaggtgaagccgtgggtgttattgcg
gcacaatctatcggtgaaccgggtacacagttaacgatgcgtacgttccatatcggtggt
gcggcgtctgcagcagcgaaagaatccagtatccaagtgaaaaacacgggtaccttacgt
ttagccaacgtgaaatttgtcaccaataacgaaggtaagttagtgttaacatcacgtaac
accgaattaaccattattgatgcctttggtcgtacaaaagagcactataaagtgccttac
ggtgcgattttaagcaaaggtgatgggcaagaggtgacagccggtgaaaccgtagcaaac
tgggatccacatactatgccagtggtgtctgaggtaagtggttttgtgaaattcattgac
cttattgacggtttaaccgtgacacgtcaaactgatgagttgactggtttatcttctatc
gtggtacaagatgtgggtgaacgtgcgacagcaggtaaagacttacgtccagctatcaaa
ttagtggatgcgaaaggtaatgatatcttaattccagggacagacgtggtagcacagtac
ttcttaccaggtaaagcgatcgtgaccttagacgacaatgcggaagttcatatcggtgaa
ccattagcacgtattccacaagaatcggtaggaacgaaagatattaccggtggtcttcca
cgcgtagcagacttatttgaagcacgtaaaccgaaagagccagccattttggcggaaatt
tcaggtatcgtgtccttcggtaaagaaaccaaaggtaaacgtcgcttattgatcaccccg
gctgaaggtgaaacttacgaagaaatgattccaaaatggcgtcagctcaacgtatttgaa
ggcgaaatggtggagcgtggtgacttgatctcggatggtgcagaaaccccacatgatatc
ttacgcttacgtggcgttcacgcagtcacagaatatatcgttaacgaagtacaagaagtt
taccgcttacaaggggtaaaaattaacgataaacacatcgaagtgatcgttcgccaaatg
ttacgtaaaggtattgtcacgaaagcttatgactctgaattcttagagggtgagcaagtc
gaagtggcacgcgtgaaaattgtgaaccgtaagcgtgaagctgaaggtaaaccattagtt
gaatttgaacgtgaattgcttggtattactaaagcgtctcttgcaactgagtcatttatc
tcagcagcatcgttccaagaaaccacacgtgtgttaaccgaagccgcagtggcaggtaaa
cgtgatgaattacgtggcttgaaagagaacgtaattgtgggtcgtttaatcccagcgggt
accggttttgcttaccaccaaaatcgtcagaagaaagtggtgatgagtgatgaaatgcca
gtgaaattatctgccgcagatgaagaagaaatcgcagcagaatttacggtgactgcagaa
gacgccacagcaagtttagcagaaatgttaaatatggctgatgatgcagaataa
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integrated database retrieval system