Pyrobaculum oguniense: Pogu_2307
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Entry
Pogu_2307 CDS
T01735
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pog
Pyrobaculum oguniense
Brite
KEGG Orthology (KO) [BR:
pog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pog03016
]
Pogu_2307
Enzymes [BR:
pog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pogu_2307
Transfer RNA biogenesis [BR:
pog03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pogu_2307
Prokaryotic type
tRNA splicing ligases
Pogu_2307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF5617
Motif
Other DBs
NCBI-ProteinID:
AFA40334
UniProt:
H6QBI3
LinkDB
All DBs
Position
complement(2003221..2004675)
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AA seq
484 aa
AA seq
DB search
MRSYSITKISDYIWEIPPGVKPCQKVPVRIYADSVLLEKMKTDMTLEQGINVGCLPGIYR
WSIVLPDAHQGYGFPIGGVAAIDAEEGVISPGGIGYDINCGVRVLRTNLTEQDVRPKLKE
LVDTIFRLVPPGVGGTGHLKLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIEERGSWKLA
DPSKVSEKAKARGRDQLGTLGSGNHFLEIQVVDKIYDEKVAKLFGIEREGQVVVMIHTGS
RGFGHQVATDYLLIMERKMRQWGLNLPDRELAAAPLKDKVAEDYIKAMASAANFAWTNRH
IIMHWVREAFKKVFGSIEKVGLEIVYDVAHNIAKLEEHVVDEKGTVKKVWVHRKGATRAF
PPGRPEIPAKYREVGQPVLIPGSMGTASWILVGTHDSMRLTFGTAPHGAGRVLSREAAIR
MYPPHKVQEEMSKRGIIVRSAETEVISEEAPWAYKDVDRVVEAAHQVGFARKVVRQRPIG
VVKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagctattccatcaccaaaatatcagactacatctgggaaatcccgcccggagta
aagccttgtcagaaggtgcccgtgaggatctacgcagactccgtactgctggagaaaatg
aaaactgacatgaccctagagcagggcatcaacgtcgggtgtcttcccggcatttatagg
tggtcaattgtgctccccgacgcgcaccagggctacggctttcccattggaggtgtcgcc
gccattgacgccgaggagggcgtgatcagccctgggggcatcggctacgacatcaactgc
ggtgtgagggtgcttaggactaacctcacggagcaggatgttaggccgaagctcaaggag
ctggtggacacaatcttccgcctcgtgccgcctggcgtagggggcaccggccatctaaag
ctctcgccgggggagttcgagcgggtcttggcggagggggtggagtgggcggtgcagaag
ggctatggctgggctgaggacatggagtacatagaggagagggggtcttggaagctggcc
gacccgtctaaggtgtcggagaaggccaaggcgagggggagggaccagctgggcaccctg
gggtctggcaaccacttcttggagatacaggtggtggacaagatatacgacgagaaggtg
gccaagctcttcggcatagagagggagggccaggtagtggtaatgatccacacggggagc
agaggcttcggccaccaggtggcgacggactacctcttgatcatggagaggaaaatgagg
cagtgggggctaaacctgccagatagggagctggctgcggcgccgcttaaggacaaggtg
gcggaggactacataaaggccatggcgtctgcggctaacttcgcctggacgaaccgccac
atcatcatgcactgggtgagggaggcgtttaagaaggtgttcggctctattgagaaggtt
ggtctggagatagtatacgacgtggctcacaacatcgccaagctggaggagcacgtcgtg
gacgagaagggcactgttaagaaggtgtgggtccaccgcaagggcgccactagggccttc
ccgcccggcaggccggagatcccggcgaagtacagagaggtcggccagccggtgctgatc
cccggctccatgggcacagcctcgtggatcctcgtcggtacccacgactccatgaggctg
accttcggcactgcgccccacggcgctgggagggtgctcagccgcgaagccgccattagg
atgtacccgccgcacaaggtgcaggaggagatgtccaagagggggataatagtcaggtct
gctgagaccgaggtgataagtgaagaggcgccttgggcctacaaggacgtggaccgcgta
gtcgaagccgcccaccaagtaggatttgctaggaaagtggtcaggcagaggcctatagga
gtagtaaagggctaa
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integrated database retrieval system
