Pseudomonas orientalis: BOP93_24375
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Entry
BOP93_24375 CDS
T05323
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
poi
Pseudomonas orientalis
Pathway
poi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BOP93_24375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poi03019
]
BOP93_24375
Messenger RNA biogenesis [BR:
poi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BOP93_24375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AUZ48599
UniProt:
A0A2L0S2P3
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All DBs
Position
5557453..5559336
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AA seq
627 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLL
AHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGKEKTATSSRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDV
DNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAAAPRGGQPQGARQNGPRNSSGGTTGTPP
AKRSGPRNGAPRDGQARREDSRSNNRRPARDEQPRSSEPAVQNPRGGPAPKIIHKESKAD
RFPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcgcagacaggtaccggtaaaaccggtggtttcgccctcccgattctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaacca
cgcgtactggtcctgacccccacccgcgaactcgccgcccaagtgcacgacagcttcaag
ctgtatgcccgcgacttgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
cctcaggttcaggccatgtcccgtggtgtcgacgtgctggtggcatgcccgggtcgtttg
ctcgacctgtgcggccagggcagcgtcgatttgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaagtgctcgcccgc
ctgccggccaaacgtcagaacctgctgttctcggcaacgttctcccaggacatcactgcc
ctggccggcaagttgctgcacaacccggagcgcatcgaagtcacgccgcccaacaccacg
gtcgagcgcatcgaacaacgcgtcttccgcctggccgccagccacaagcgctcgctgctg
gcgcacctgatcacccacggcgcgtgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcatggcctcaccgccgttgccatccac
ggtaacaagagccagaacgcacgcaccaaggccctggctgacttcaaggccggttccgta
cgcatcctggtcgccaccgatatcgccgcccgcggcctggacatcgaccaactgccgcac
gtggtcaacttcgagctgcccaacgtcgatgaagactacgtgcaccgtatcggccgcaca
ggccgtgccggtcgttcgggcgaggccatttccctggtcgcgccggacgaagaaaaactg
ctcaaaagcatcgagcgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcaccgtggaggccgaaaagccagaagcgcgcgagcgtccggacgtgcgtaac
ccacgcaacccacgcggtccgaagggcgatggcccgaacggcggcggtggtggcggtggc
cgtcgcgacaagggcaaggacaaaggcaaggaaaaaaccgcgaccagcagccgtggcgaa
cgtccggcccgcgagcagaagccacgtgaaggcactccggcccgcgaacagcgccagccg
agccagccgccacgtgctgcagccgatcgtgctccggacgaattcctcgacgacgatgtg
gataacttcggtaaccgcgtcgactacgtgccacaggccaagcctgcacaaggccgtggc
cgtcgcccaggtgccccggcacaaggcgcaggcgcagccgctccacgtggcggccagcca
cagggcgctcgtcagaatggcccgcgcaacagcagcggcggcaccaccggtacgccgccg
gccaagcgcagcggcccgcgtaacggtgcaccgcgtgacggtcaggcccgtcgcgaagac
tcgcgcagcaacaaccgccgcccggcccgtgacgagcagccacgttcgtccgagccagca
gtgcaaaacccgcgcggcggcccggcgccgaagattatccacaaggagtcgaaagcggat
cgcttcccgacacccgagcagttggatcaactgcctggccgtcctcgtggtgagaaacca
gcgctgctgacccgcaaccgctga
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