Pongo abelii (Sumatran orangutan): 100459117
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Entry
100459117 CDS
T01416
Symbol
SCN5A
Name
(RefSeq) sodium channel protein type 5 subunit alpha isoform X1
KO
K04838
voltage-gated sodium channel type V alpha
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
100459117 (SCN5A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pon04040
]
100459117 (SCN5A)
Ion channels [BR:
pon04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100459117 (SCN5A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
GPHH
IQ
CcmD_alt
Motif
Other DBs
NCBI-GeneID:
100459117
NCBI-ProteinID:
XP_024100993
LinkDB
All DBs
Position
3:103286786..103389800
Genome browser
AA seq
2015 aa
AA seq
DB search
MANFLLPRGTSSFRRFTRESLAAIEKRMVEKQARGSTTLQESREGLPEEEAPRPQLDLQA
SKKLPDLYGNPPRELIGEPLEDLDPFYSTQKTFIVLNKGKTIFRFSATNALYVLSPFHPI
RRAAVKILVHSLFSMLIMCTILTNCVFMAQHDPPPWTKYVEYTFTAIYTFESLVKILARG
FCLHAFTFLRDPWNWLDFSVIVMAYTTEFVDLGNVSALRTFRVLRALKTISVISGLKTIV
GALIQSVKKLADVMVLTVFCLSVFALIGLQLFMGNLRHKCVRNFTALNGTNGSVEADGLV
WESLDLYLSDPENYLLKNGTSDVLLCGNSSDAGTCPEGYRCLKAGENPDHGYTSFDSFAW
AFLALFRLMTQDCWERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQN
QATIAETEEKEKRFQEAMEMLKKEHEALTIRGVDTVSRSSLEMSPLAPVNSHERRSKRRK
RMSSGTEECGEDRFPKSDSEDGPRAMNHLSLTHGLSRTSMKPRSSRGSIFTFRRRDLGSE
ADFADDENSTAGESESHHISLLVPWPLRRTSAQGQPSPGTSAPGHALNGKKNSTVDCNGV
VSLLGAGDLEATSPGSHLLHPVMLEHPPDTTTPSEEPGGPQMLTSQAPCVDGFEEPGARQ
RALSAVSVLTSALEELEESRRKCPPCWNRLAQRYLIWECCPLWMSIKQGVKLVVMDPFTD
LTITMCIVLNTLFMALEHYNMTSEFEEMLQVGNLVFTGIFTAEMTFKIIALDPYYYFQQG
WNIFDSIIVILSLMELGLSRMSNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALG
NLTLVLAIIVFIFAVVGMQLFGKNYSELRDSDSGLLPRWHMMDFFHAFLIIFRILCGEWI
ETMWDCMEVSGQSLCLLVFLLVMVIGNLVVLNLFLALLLSSFSADNLTAPDEDRELNNLQ
LALARIQRGLRFVKRTTWDFCCGLLRQRPQKPAALAAQGQLPSCIATPYSPPPPETEKAP
PTRKETRFEESKQPGQGTPGDPEPVCVPIAVAESDTDDQEEDEENSLGTEESSKQQESQP
VSGGPEAPPDSRTWSQVSATASSEAEASASQADRRQQRKAEPQAPGCGETPEDSCSEGST
ADMTNTAELLEQIPDLGQDVKDPEDCFTEGCVRRCPCCAVDTTQAPGKVWWQLRKTCYHI
VEHSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLLEYADKMFTYVFVLEMLLKWVAY
GFKKYFTNAWCWLDFLIVDVSLISLVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGMR
VVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNNK
SQCESLNMTGELYWTKVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGYEEQPQWE
YNLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKL
GSKKPQKPIPRPLNKYQGFIFDIVTKQAFDVTIMFLICLNMVTMMVETDDQSPEKINILA
KINLLFVAIFTGECIVKLAALRHYYFTNSWNIFDFVVVILSIVGTVLSDIIQKYFFSPTL
FRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAY
VKWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPYCDPTLPNSNGSRGD
CGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVATEESTEPLSEDDFDMFYEIWEKF
DPEATQFIEYSVLSDFADALSEPLRIAKPNQISLINMDLPMVSGDRIHCMDILFAFTKRV
LGESGEMDALKIQMEEKFMAANPSKISYEPITTTLRRKHEEVSATVIQRAFRRHLLQRSL
KHASFLFRQQAGRGLSEEDAPEQEGLIAYVMSENFSRPLGPPSSSSISSTSFPPSYDSVT
RATSDNLQVRGSDYSHSEDLADFTPSPDRDRESTV
NT seq
6048 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacttcctgttacctcggggcaccagcagcttccgcaggttcacacgggagtcc
ctggcagccattgagaagcgcatggtggagaagcaagcccgcggctcaaccaccttgcag
gagagccgagaggggctgcctgaggaggaggctccccggccccagctggacctgcaggcc
tctaaaaagctgccagatctctatggcaatccaccccgagagctcatcggagagcccctg
gaggacctggaccccttctatagcacccaaaagactttcatcgtactgaataaaggcaag
accatcttccggttcagtgccaccaacgccttgtatgtcctcagtcccttccaccccatc
cggagagcagctgtgaagattctggttcactcgctcttcagcatgctcatcatgtgcacc
atcctcaccaactgcgtgttcatggcccagcacgaccctccaccctggaccaagtatgtc
gagtacaccttcaccgccatttacacctttgagtctctggtcaagattctggctcgaggc
ttctgcctgcatgcgttcactttccttcgggacccatggaactggctggacttcagtgtg
attgtcatggcatacacaactgaatttgtggacctgggcaatgtctcagccttacgcacc
ttccgagtcctccgggccctgaaaactatatcagtcatttcagggctgaagaccatcgtg
ggggccctgatccagtctgtgaagaagctggctgatgtgatggtcctcacagtcttctgc
ctcagcgtctttgccctcataggcctgcagctcttcatgggcaacctaaggcacaagtgc
gtgcgcaacttcacggcgctcaatggcaccaacggctccgtggaggccgacggcttggtc
tgggaatccctggacctttacctcagtgatccagaaaattacctgctcaagaatggcacc
tctgacgtgttactgtgtgggaacagctctgacgctgggacatgtcctgagggctaccgg
tgcctaaaggcaggtgagaaccctgaccacggctacaccagcttcgattcctttgcctgg
gcctttcttgcactcttccgcctgatgacgcaggactgctgggagcgcctctatcagcag
accctcaggtccgcagggaagatctacatgatcttcttcatgcttgtcatcttcctgggg
tccttctacctggtgaacctgatcctggccgtggtcgccatggcctatgaggagcaaaac
caagccaccatcgctgagactgaggagaaggaaaagcgcttccaggaggccatggaaatg
ctcaagaaagaacacgaggccctcaccatcaggggtgtggataccgtgtcccgtagctcc
ttggagatgtcccctttggccccagtaaacagccacgagagaagaagcaagaggagaaaa
cggatgtcttcaggaactgaggaatgtggggaggacaggttccccaagtctgactcagaa
gatggtcccagagcaatgaatcatctcagcctcacccatggcctcagcagaacttctatg
aagccacgttccagccgcgggagcattttcacctttcgccggcgagacctgggttccgaa
gcagattttgcagatgatgaaaacagcacagcgggggagagcgagagccaccacatatca
ctgctggtgccctggcccctgcgccggaccagtgcccagggacagcccagtcccggaacc
tcggctcctggccacgccctcaatggcaaaaagaacagcactgtggactgcaatggggtg
gtctcattactgggggcaggcgacctagaggccacatccccaggaagccacctcctccac
cctgtgatgctagaacacccaccagacacgaccacgccatcggaggagccaggcgggccc
cagatgctgacctcccaggctccgtgtgtagatggcttcgaggagccaggagcacggcag
cgggccctcagcgcagtcagtgtcctcaccagcgcactggaagagttagaggagtctcgc
cgcaagtgtcctccatgctggaaccgccttgcccagcgctacctgatctgggagtgctgc
ccgctgtggatgtccatcaagcagggagtgaagttggtggtcatggacccgtttactgac
ctcaccatcactatgtgcatcgtgctcaacacactcttcatggcgctggagcactacaac
atgacaagtgaattcgaggagatgctgcaggtcggaaacctggtcttcacagggatcttc
acagcagagatgaccttcaagatcattgccctcgacccctactactacttccaacagggc
tggaacatcttcgacagcatcatcgtcatccttagcctcatggagctgggcctgtcccgc
atgagcaacttgtcggtgctgcgctccttccgcctgctgcgggtcttcaagctggccaaa
tcgtggcccaccctgaacacactcatcaagatcatcgggaactcagtgggggcactgggg
aacctgacactggtgctagccatcatcgtgttcatctttgctgtggtgggcatgcagctc
tttggcaagaactactcagagctgagggacagcgactcaggcctgctgcctcgctggcac
atgatggacttctttcatgccttcctcatcatcttccgcatcctctgtggagagtggatc
gagaccatgtgggactgcatggaggtgtctgggcagtcattatgcctgctggtcttcttg
cttgttatggtcattggcaaccttgtggtcctgaatctcttcctggccttgctgctcagc
tccttcagtgcagacaacctcacagcccctgatgaggacagagagctgaacaacctccag
ctggccctggcccgcatccagaggggactgcgctttgtcaagcggaccacctgggatttc
tgctgtggtctcctgcggcagcggcctcagaagcctgcagcccttgccgctcagggccag
ctgcccagctgcattgccaccccctactccccaccacccccagagacggagaaggcgcct
cccacccgcaaggaaacacggtttgaggaaagcaagcaaccgggccagggcacccctggg
gatccagagcccgtgtgtgtgcccatcgctgtggccgagtcagacacagatgaccaagaa
gaggatgaggagaacagcctgggcacggaggagtccagcaagcagcaggaatcccagcct
gtgtccggtggcccagaggcccctccggattccaggacctggagccaggtgtcagcaact
gcctcctctgaggctgaggccagtgcatctcaggctgaccggcggcagcagcggaaagcg
gaaccccaggccccagggtgcggtgagaccccagaggacagttgctccgagggcagcaca
gcagacatgaccaacaccgctgagctcctggagcagatccccgacctcggccaggatgtc
aaggatccagaggactgcttcaccgaaggctgtgtccggcgctgtccctgctgtgcagtg
gacaccacacaggccccagggaaggtctggtggcagttgcgcaagacctgctaccacatc
gtggagcacagctggttcgagacattcatcatcttcatgatcttactcagcagtggagcg
ctggccttcgaggacatctacctagaggagcggaagaccatcaaggttctgcttgaatat
gctgacaagatgttcacctatgtcttcgtgctggagatgctgctcaagtgggtggcctac
ggcttcaagaagtacttcaccaatgcctggtgctggctcgacttcctcatcgtggacgtc
tctctgatcagcctggtggccaacaccctgggctttgccgagatgggccccatcaagtca
ctgcggacgctgcgtgcactccgccccctgagagctctgtcacgatttgagggcatgagg
gtggttgtcaatgccctggtgggcgccatcccgtccatcatgaacgtcctcctcgtctgc
ctcatcttctggctcatcttcagcatcatgggcgtgaacctcttcgcggggaagtttggg
aggtgcatcaaccagacagagggagacttgcctttgaactacaccatcgtgaacaacaag
agccagtgtgagtccttgaacatgaccggagaattgtactggaccaaggtgaaagtcaac
tttgacaacgtgggggccgggtacctggcccttctgcaggtggcaacatttaaaggctgg
atggacattatgtatgcagctgtggactccagggggtatgaagagcagcctcagtgggaa
tacaacctctacatgtacatctattttgtcattttcatcatcttcgggtctttcttcacc
ctgaacctctttatcggtgtcatcattgacaacttcaaccaacagaagaaaaagttaggg
ggccaggacatcttcatgacagaggagcagaagaagtactacaatgccatgaagaagctg
ggctccaagaagccccagaagcccatcccacggccactgaacaagtaccagggcttcata
ttcgacattgtgaccaagcaggcctttgatgtcaccatcatgtttctgatctgcttgaat
atggtgaccatgatggtggagacagatgaccaaagtcccgagaaaatcaacatcttggcc
aagatcaacctgctctttgtggccatcttcacaggcgagtgtattgtcaagctggctgcc
ctgcgccactattacttcaccaacagctggaatatcttcgacttcgtggttgtcatcctc
tccatcgtgggcactgtgctctcggacatcatccagaagtacttcttctccccaacgctc
ttccgagtcatccgcctggcccgaatcggccgcatcctcagactgatccgaggggccaag
gggatccgcacgctgctctttgccctcatgatgtccctgcctgccctcttcaacatcggg
ctgctgctcttcctcgtcatgttcatctactccatctttggcatggccaacttcgcttat
gtcaagtgggaggctggcatcgatgacatgttcaacttccagaccttcgccaacagcatg
ctgtgcctcttccagatcaccacgtcagccggctgggatggcctcctcagccccatcctc
aacactgggccgccctactgcgaccccactctgcccaacagcaatggctctcggggtgac
tgtgggagcccagctgtgggcatcctcttcttcaccacctacatcatcatctccttcctc
atcgtggtcaacatgtacattgccatcatcctggagaacttcagcgtggccacggaggag
agcaccgagcccctgagtgaggacgacttcgatatgttctatgagatctgggagaagttt
gacccagaggccactcagtttattgagtattcggtcctgtctgactttgccgatgccctg
tctgagccactccgtatcgccaagcccaaccagataagcctcatcaacatggacctgccc
atggtgagtggggaccgcatccattgcatggacatcctctttgccttcaccaaaagggtc
ctgggggagtctggggagatggacgccctgaagatccagatggaggagaagttcatggca
gccaacccatccaagatctcctacgagcccatcaccaccacactccggcgcaagcacgaa
gaggtgtcggccacggttatccagagggccttccgcaggcacctgctgcaacgctctttg
aagcatgcctccttcctcttccgtcagcaggcgggcaggggcctctccgaagaggatgcc
cctgagcaagagggcctcatcgcctatgtgatgagtgagaacttctcccgaccccttggc
ccaccctccagctcctccatctcctccacttccttcccaccctcctatgacagtgtcact
agagccaccagcgataacctccaggtgcgggggtctgactacagccacagcgaagatctc
gccgacttcaccccgtctccggacagggaccgtgagtccactgtgtga
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