Pseudomonas oryzihabitans: APT59_19945
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Entry
APT59_19945 CDS
T04267
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
por
Pseudomonas oryzihabitans
Pathway
por03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
por00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APT59_19945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
por03021
]
APT59_19945
03400 DNA repair and recombination proteins [BR:
por03400
]
APT59_19945
Enzymes [BR:
por01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APT59_19945
Transcription machinery [BR:
por03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APT59_19945
DNA repair and recombination proteins [BR:
por03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APT59_19945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Trm5_N
Hus1
Motif
Other DBs
NCBI-ProteinID:
ALZ86366
UniProt:
A0A0U4P7H9
LinkDB
All DBs
Position
complement(4380998..4381999)
Genome browser
AA seq
333 aa
AA seq
DB search
MQSSVNEFLTPRHIDVQAVSQTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLSLSKKGQGPVLASDIQVDHD
VEIVNGEHVIAHLADNGSLNMKLKIARGRGYEPADARQSEEDETRAIGRLQLDATFSPVR
RVAYVVENARVEQRTNLDKLVLDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagagttcggtaaatgagttcctgaccccccgccatatcgatgtgcaggcggttagt
cagacccgtgccaagatcaccctcgagcctctcgagcgtggtttcggccataccttgggc
aacgcgctgcggcgtatcctgttgtcctccatgcctggctgcgcggtagtcgaagcagag
atcgacggtgttctgcacgagtacagcgccatcgaaggcgtgcaggaagacgtgatcgag
atcctgctcaacctcaagggtctggccatcaagttgcacggccgtgacgaagtcaccctg
agtctgagcaagaaaggtcaggggccagttctggcctccgacattcaggtcgatcacgac
gtcgagatcgtcaacggtgagcacgtcatcgcccacctggcggacaacggttcgctgaac
atgaagctgaaaatcgcgcgcggtcgtggctatgagcccgccgatgcgcgtcagagcgaa
gaagacgaaacccgcgcaatcggtcgtctccagctcgatgctacgttcagcccggttcgt
cgcgtggcctatgtggtggaaaacgcccgggtcgaacagcgtaccaacctggacaagctc
gtgcttgacctggaaaccaacggtaccctggatccggaagaagccatccgccgtgccgct
accattctgcagcagcagctggcagcgtttgtcgacctcaagggcgacagcgagccggtc
gtggtcgagcaggaagacgagatcgatccgatcctgctgcgtccggtggacgatctggaa
ctgaccgttcgttcggccaactgcctcaaggcggagaacatctactacatcggtgacctg
attcagcgtaccgaagtggagctgctcaagaccccgaacctgggcaagaagtccctgacc
gaaatcaaggacgtcctggcctcccgtggtctgtcgctcggtatgcgcctggacaactgg
ccccctgcaagccttaagaaggacgacaaggctactgcctga
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