Komagataella phaffii: PAS_chr1-4_0355
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Entry
PAS_chr1-4_0355 CDS
T01092
Name
(RefSeq) Subunit of cleavage factor I
KO
K14411
RNA-binding protein Musashi
Organism
ppa
Komagataella phaffii
Pathway
ppa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PAS_chr1-4_0355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-4_0355
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PAS_chr1-4_0355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
TFIIA
DUF4199
Motif
Other DBs
NCBI-GeneID:
8197803
NCBI-ProteinID:
XP_002490478
UniProt:
C4QY74
LinkDB
All DBs
Position
1:2061676..2063064
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AA seq
462 aa
AA seq
DB search
MSLEDDEALFDDIYGDEPQQKDAQEVVEKETKDETKSTSDGASQPLKDDDQKKPDSSATE
ASSKGPSAPVLSNTSTSQSDDTPLPPPPISNSTPSYNSAPAYPPYGQQQQHQQHQQHQQQ
PQQQQFQQPAVPFPPAKPAPDSVKADIYKSEQGKMFIGGLNWETTEETLRNYFGQFGDIT
DLTIMRDNATGRSRGFGFLTFTKTASVDEVLKKQHVLDGKLIDPKRAIPREEQDKTGKIF
VGGIAAEVTEEDFTDYFSQFGTIIDAQLMIDKDTGRSRGFGFVTYDSPDAVDRVCANKYV
PLKGRSMEIKRAEPRNQQQNQRTNANPYNPMGAMGGMPGMPGMGAPGQQAYYNGMSQEMM
QQYYQQMQQYWMQMQQMQQQQQQQQGSDAAEGEGDSESYSDQPRDDDQVPNPQQERPQFP
SGPKHSNRPPPRGPRSDRGGRRGGGRGRRGGAGGGGFHPYSR
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtccttagaagatgatgaagctttatttgatgacatctacggtgatgagccacaacag
aaagatgctcaggaagtggtagagaaagaaactaaggacgagacgaagtctacatcagac
ggggccagccagcctctgaaagatgacgaccaaaagaagccagattcttcggctactgaa
gcttcgtcaaaggggccctctgcccctgtgttatctaacacatccactagtcaatctgat
gatactccactcccccctcctcctataagcaactcgacaccttcgtacaatagcgcacca
gcctatcccccgtatggacagcaacagcagcaccaacagcaccaacagcaccaacaacag
ccacaacagcagcagttccaacagcctgcagttcctttccctccagcaaagcccgcccca
gactctgtcaaggctgacatttacaagagtgaacaaggtaaaatgttcataggaggtctc
aactgggagaccaccgaagaaaccttgcggaactactttggtcagtttggtgatatcacg
gatttaaccatcatgcgtgacaatgccactggtaggtctcgaggtttcggattcttgacc
tttactaagacagcatccgtggatgaagtcttgaaaaagcagcatgtactggatggaaaa
cttattgaccctaagagagcgattccaagagaagagcaggataaaactggtaagatcttt
gtaggaggtattgctgctgaggtaacagaggaagacttcactgactatttctcccagttc
ggtactattattgacgcacaattaatgatcgacaaggatactggaagatcccgtggattt
ggatttgttacttatgactccccagacgcagttgatcgagtctgtgctaataagtatgtt
cctctgaagggacgttccatggaaattaaaagagctgagccgagaaaccagcaacaaaac
caacgtactaatgcaaatccgtataaccctatgggagccatgggaggaatgcctggaatg
cccggaatgggagcgcctggacagcaggcatattacaatggtatgtctcaggagatgatg
caacagtattatcaacagatgcaacagtattggatgcaaatgcaacaaatgcaacagcag
caacagcaacagcaaggtagcgatgctgcagaaggtgaaggtgattccgagtcttattca
gaccagcctcgtgatgatgaccaggttcctaatccgcaacaggagagacctcaattccct
tcaggtcctaaacattcaaatcgtcccccaccacgtggacctcgttctgaccgtggtgga
agacgtggaggaggccgtggaagaagaggcggtgcaggaggaggaggattccacccctac
agtcgttag
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