Komagataella phaffii: PAS_chr3_0657
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Entry
PAS_chr3_0657 CDS
T01092
Name
(RefSeq) ATP-dependent RNA helicase of the SFI superfamily, required for nonsense mediated mRNA decay and for
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03013
Nucleocytoplasmic transport
ppa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PAS_chr3_0657
03015 mRNA surveillance pathway
PAS_chr3_0657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr3_0657
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PAS_chr3_0657
5.6.2.5 RNA 5'-3' helicase
PAS_chr3_0657
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PAS_chr3_0657
mRNA cycle factors
Common to processing body (P body) and stress granule
PAS_chr3_0657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
PIF1
UvrD-helicase
DEAD
nSTAND3
Helicase_RecD
ATPase
AAA_7
PhoH
AAA_22
SRP54
T2SSE
AAA_16
UvrD_C_2
AAA_34
NACHT
Sigma54_activat
AAA_25
RNA_helicase
AAA
CbiA
Motif
Other DBs
NCBI-GeneID:
8200358
NCBI-ProteinID:
XP_002492883
UniProt:
C4R568
LinkDB
All DBs
Position
3:complement(join(1255743..1257928,1258008..1258647))
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AA seq
941 aa
AA seq
DB search
MNHDSPLTSVVNQSIDVSSESSLSKQDLDKLINQNSENFVSHEQEILSLTALPEHACKYC
GVSNPRCVVRCDICKKWFCNGKSGTTSHIISHMVLSRHHEVSLHSDSDLGETELECYSCG
NKDPFMLGFVSAKTDTIVVILCRIPCSQAKDSDWNTANWQPLVEERCFLDWIADYPTPLD
MANARAISPLDISKLERQWRSDETATLEDIKDLIDATAQYDKQLTESQGLNYISVSWSMS
PHNYHLAKFSLSSYDSSNLKIAVGDEIILHYDGIKEEKWQGSGYVIKLPATYSEGFTLEL
QPSSVKPPTEHNVGFRAEIVWKGISFQRMQAALTTFAEKKSISKDLYDILLGHKEEQPEF
TAKLPEAISVPNFTQLNPSQVNAVKSVLQQRLSLIQGPPGTGKTVTSATIVYHLAKSKKK
KVLVTASSNIAVDHLASKLEDIGLKVVRVTARSRENVESAIDHLSLSSLVSNTNNPVLKK
LLKKKDELGSLSKKDMNIYISQTKKAEAEILAEAHVVCCTCSGAGDKRLANIKFPYVLID
ESTQPSEPESLIPIVKGAKQVILVGDHQQLGPVILHNGAAKAGLRQSLFERLIKLGHIPI
RLEVQYRMHPSLSEFPSNMFYDGSLQNGVSHEQRLIRRSSFPWPAPGIPLLFWSSYGTEE
ISISGTSFLNRSEAMNCEKIISRLLSEGIKPHQIGVITPYQGQRDYIVQYLLMNGAHPDR
EIYQDVEVASVDAFQGREKDFIIFSCTRSNHTNTIGFLKDARRLNVAITRAKYGLFVLGN
IKTLQKDPLWNRLLVHFRDKGALVEGRLDSFQLYTASLESARFKSTAENNGLNQGDNKGD
LNSNGFSNPKFTAEDLSSTSFSSLHPFRANVDTDSRFASNPSIPSMSPFLNQPQWTNPST
FQLNEQIRPSTPDGPPVDLRFIQGLNLDEPISELTSRFNNL
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacgatagtccgctaacgtctgtggttaatcaatccatcgacgtatcatctgaa
tcatcattgtcaaaacaagatctggacaaattgatcaatcagaactcggaaaactttgta
tcccatgaacaggaaattctttctttaactgcattaccagaacatgcctgcaaatactgt
ggagtgagcaatccacgttgtgttgttcggtgtgatatctgtaagaaatggttctgtaat
ggcaaatcgggaaccacttctcatatcattagtcatatggtactctcccgtcatcatgaa
gtttcattgcattcggattcagatttaggtgaaacagagctggagtgttacagttgtggg
aacaaagatccattcatgctaggttttgtcagtgccaaaactgatactatagttgtcatt
ctgtgtcgaattccttgttcgcaggccaaggatagtgattggaacactgccaattggcaa
cccttagtggaagaaagatgcttcctagattggatcgctgattatccaacgccgttggac
atggccaacgcccgtgccatttcccctcttgatatatctaagttggagagacagtggaga
tctgatgaaactgcaactttggaagatatcaaagatttaattgatgccactgcacagtac
gacaaacagctcactgaaagtcagggccttaactatatttctgtttcttggtccatgtct
cctcataattatcacttagcaaaattctccttatcttcctacgattcatccaacctcaaa
attgctgttggggacgaaatcattttacactacgatggtatcaaggaagagaaatggcaa
ggctctggatatgtcatcaagttgccagccacatactccgaaggattcacgctggaattg
cagccatcttctgtgaaaccccctaccgaacataacgttgggttcagagcagaaattgtt
tggaaaggaatcagttttcagagaatgcaagctgccctgacaacttttgctgagaaaaaa
tccattagtaaagacctttatgatattctgttaggacataaagaagaacagccagagttt
actgccaaacttccagaagccatatctgttccaaacttcacacagttgaatccatctcaa
gtcaatgcagtgaagtctgttttacaacaaaggctatcactaattcaaggtccacccgga
actggtaagactgttacatctgctacaatcgtctatcatctggccaaatcaaagaaaaag
aaggttttggtcacagcatcttccaacattgcggttgatcacttagcctccaaactggaa
gatataggtttgaaagttgttcgtgttacagctagaagcagagagaatgttgaatccgca
attgatcatctaagcctcagcagcttagtgtcaaacactaacaatcccgttctgaaaaag
ctactaaagaaaaaagatgaactgggaagcttatcaaagaaagatatgaatatctatatt
tcacaaaccaaaaaagcagaagcagaaatacttgccgaagcccatgtagtttgttgcact
tgttctggtgctggtgataagagattggctaatataaaatttccttatgtgctgatagat
gaaagtactcaaccatcggaaccagagtctttgatccccattgttaagggtgcgaagcag
gtgattttggttggagatcaccaacagttaggtcctgttattttgcataatggagctgct
aaagcaggcttaagacagtcgttgtttgaaagactgattaaactggggcatattcctatt
cgtttggaagttcaatatcgtatgcatccttcactctctgaattcccaagcaacatgttc
tatgatggttcattgcagaacggtgtaagtcatgaacagcgacttattcgcaggtcctca
ttcccatggcctgcacctggaatcccccttctattttggtcaagttacggaacagaggaa
atatctattagtggaacctcctttttgaatagatcagaggcaatgaactgtgaaaaaatt
atttcaagattgttaagtgaaggaatcaaaccccatcaaattggtgtcattactccttac
cagggacaaagagattacattgttcagtatcttttaatgaatggtgctcatccagaccgt
gaaatctatcaagacgttgaagtcgcatccgtggacgcatttcaaggtcgtgaaaaggac
ttcattattttctcctgtacccgatctaatcatacaaacactattggatttttgaaagat
gctaggcgtttaaatgttgctataacgagggccaaatatggactttttgtccttggtaat
atcaagactctgcaaaaagatcctttgtggaatcgtttgttagtccatttcagagacaag
ggtgctttagttgaagggagacttgatagcttccagttatacacagcgtccttggaatca
gccagatttaagtctactgctgagaataacggcttgaatcaaggcgacaataaaggtgac
ttaaattcaaatggatttagcaaccccaagtttactgcagaagatttaagctctacttca
ttctcatctctacatcctttcagggctaatgtcgacacagactctcggtttgcttccaat
ccaagtattccctctatgagtccctttttaaatcagccacagtggacgaatccttccact
ttccaactaaacgaacagattcgcccgtcaaccccagatggaccaccagtagaccttaga
tttattcaaggattgaacttggacgaacctataagtgagcttacaagtcgcttcaataat
ctttga
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