Pseudomonas putida BIRD-1: PPUBIRD1_3828
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Entry
PPUBIRD1_3828 CDS
T01975
Name
(GenBank) Polysaccharide biosynthesis protein CapD
KO
K24300
UDP-N-acetylglucosamine 4,6-dehydratase [EC:
4.2.1.135
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb00541
O-Antigen nucleotide sugar biosynthesis
ppb00552
Teichoic acid biosynthesis
ppb01100
Metabolic pathways
ppb01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
PPUBIRD1_3828
00552 Teichoic acid biosynthesis
PPUBIRD1_3828
Enzymes [BR:
ppb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.135 UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining)
PPUBIRD1_3828
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Gene cluster
GFIT
Motif
Pfam:
Polysacc_synt_2
Epimerase
GDP_Man_Dehyd
CoA_binding_3
RmlD_sub_bind
3Beta_HSD
adh_short
NAD_binding_4
ThiF
PglD_N
KR
NAD_binding_10
TrkA_N
CoA_binding
GFO_IDH_MocA
Motif
Other DBs
NCBI-ProteinID:
ADR61415
LinkDB
All DBs
Position
complement(4288330..4290324)
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AA seq
664 aa
AA seq
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MRSWLLQLTRRQKRLLQLSTDVLLIWVALWLAFVVRLGIEEMANPIIDHAWLFLTAPLVS
IPLFIRFGLYRAVMRYFGNDALIAIIKAVTLSALILGFIIYWASNHQNVVPRSITFNYWW
LSLIMIGGLRLAMRQYFLGDWFAAAVQHVPFASNGRGDGLPRVAIYGAGGAGNQLAAALR
SDKALRPVAFIDDDPSITDRVIAGLQVYRPDQLQDMIDATGAQEILLAIPSSTRTRRREI
LNFLEGYPLHVRSIPSFLDLASGKVKVDDIQEVDIADLLGRDAVPAQADLLERCIVDQIV
LVTGAGGSIGSELCRQILGQGPKTLLLFDHSEFNLYSILSELEQRVARESLTVSLVPILG
SVRNQSQLLDIMRTWHVDTVYHAAAYKHVPMVEHNITEGLMNNVIGTLHTAQAALQAGVA
NFVLISTDKAVRPTNVMGSTKRLAEMTLQALSREVAPVLFGDSSNVSQVNKTRFTMVRFG
NVLGSSGSVIPLFHKQIKAGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGKGGDVFVLD
MGEPVKIVELAEKMIHLSGFSVRSERNPMGDIAIEFTGLRPGEKLYEELLIGDNVIATRH
PMIMSANEDFLPWDTLKEFLRQLMAAAAVDDFVRVRQLLRETVSGYSPEGEIVDWIYQQR
RLEP
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagttggcttctacagcttacgcggcgccagaaacggttgctgcaattgtctact
gatgtgctgctgatatgggtggcgctctggctcgcgtttgtggtccgtctaggcattgaa
gagatggctaaccccataatcgaccatgcgtggctgttcctcactgctcctttggtgtcc
attccgttgttcattcgcttcggtttgtaccgtgcggtgatgagatatttcggtaacgac
gccttgatcgccatcatcaaggccgtgacactctcggcgctcattctcggcttcatcatc
tactgggctagcaaccaccagaatgttgtgccgcggtccatcaccttcaattactggtgg
ttgagcctgatcatgatcggcggtcttcgcctggccatgcggcagtatttcttgggtgac
tggtttgccgcggctgtgcagcacgttccttttgccagtaatggccgtggcgatggcctg
ccgcgagtggccatctatggcgccggtggtgctggcaatcagcttgctgccgccctgcgc
tctgacaaggccctgcgcccggttgccttcatcgacgatgaccccagcatcaccgaccgg
gtgattgccggcttgcaggtttaccgccccgaccagttacaggacatgatcgatgccacg
ggagcgcaggaaatcctgctagccataccgtcctctacccgcactcgccgtcgcgaaatc
ctcaacttccttgaaggctacccgctgcacgtgcgcagtattcccagcttcctggacctg
gccagcggtaaagtaaaggtggacgacatccaggaagtagatattgccgacctattgggt
cgcgatgccgtcccggcacaggctgacctgctggagcgctgcatcgtcgatcagatcgta
ctggtaaccggtgccggcggctccatcggctcggaactgtgccggcagatattgggccag
gggccaaaaaccctgctgttgttcgaccatagtgaattcaacctctacagcatcctctcc
gagctggagcagcgcgttgcccgtgaatcccttacggtcagccttgtacccatcctgggc
tcggtgcgcaaccagtcccagcttctggacatcatgcgcacctggcacgtcgacactgtc
tatcacgcagctgcctataagcacgtgccgatggtggagcacaacatcaccgaaggcctg
atgaataatgtcatcggcacactgcacactgcccaggccgcgttgcaggccggagttgcc
aacttcgtgctgatttccaccgacaaggccgtgcgcccgaccaatgtgatgggcagcacc
aaacgcctggccgagatgaccctgcaggcgctgagccgcgaagtggcgccggtgctgttt
ggcgacagcagcaacgtttcgcaggtgaacaagacccgcttcaccatggtgcgcttcggt
aacgtgctgggctcatcggggtcggtgattccactgttccacaagcagatcaaggcgggc
ggcccgcttaccgtcacccaccccaagatcacccgctacttcatgaccattcccgaggcc
gcgcagctggtaattcaggccggctccatgggcaagggtggcgatgtgttcgtgctggac
atgggcgagccggtgaaaattgtggaactggccgagaagatgattcacctgtcgggcttc
agtgtgcgctccgagcgtaacccgatgggtgatattgccattgagttcaccgggttgcgt
ccgggggaaaagctgtatgaagagttgctgattggcgataacgtcattgcgacccgtcac
ccgatgatcatgagtgccaacgaagacttcctgccctgggatacgctcaaggagttcctg
cggcagctgatggcggcagcggcggttgatgactttgtgcgggtacggcagttgctgcgc
gaaaccgtgagcggctattcgccggaaggcgagattgtcgactggatttaccagcagcgg
cgcctggagccctga
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