Pseudomonas putida BIRD-1: PPUBIRD1_4586
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Entry
PPUBIRD1_4586 CDS
T01975
Symbol
dacA
Name
(GenBank) DacA
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb00550
Peptidoglycan biosynthesis
ppb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PPUBIRD1_4586 (dacA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ppb01002
]
PPUBIRD1_4586 (dacA)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppb01011
]
PPUBIRD1_4586 (dacA)
Enzymes [BR:
ppb01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
PPUBIRD1_4586 (dacA)
Peptidases and inhibitors [BR:
ppb01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
PPUBIRD1_4586 (dacA)
Peptidoglycan biosynthesis and degradation proteins [BR:
ppb01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
PPUBIRD1_4586 (dacA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Beta-lactamase
Peptidase_S13
Motif
Other DBs
NCBI-ProteinID:
ADR62148
LinkDB
All DBs
Position
complement(5127452..5128612)
Genome browser
AA seq
386 aa
AA seq
DB search
MNITNLAKRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERL
PPASLTKLMTAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGI
IIQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPHPEHYSSAHDMA
TLARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVAS
AVRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTELTQAPVWKGATSQ
IKAGLADDLTMTMPKGQLKRLQASMTMNPQLTAPIAKGDVIGKVEVKLDEKVVHSADLIA
LDGVEEGGFFRRMWDSIRLFFYGLFN
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcaccaaccttgccaaacgactttgcctgcctgtactgctgctgatcacgcct
gccgcctttgcggcggagcagatgacgccggcgccaccgcaactggcagccaagtcctac
gtactcatggacgcgtccagcggcaacgtgctggtcgagaacaacggtgacgagcgcctg
ccgccagccagcctgaccaagctgatgaccgcctatatcgccaccctggacatccgtcgc
ggccagatcggtgaaagcgacccggttaccgtcagtgaaaacgcctggcgtaccggcggt
tcgcgcatgttcatcaaggttggcagccaggtaacggtcagcgacctgctgcacggcatc
atcatccagtccggtaacgacgcctcggtcgccctggccgagcacatcgccggcagcgaa
gacgcctttgccgacatgatgaacaagacggctgccgacctgggcatgaccaacagccac
ttcatgaacccgaccggtctgccgcaccccgagcattactcgtcggcgcacgacatggcg
accctggcccgtgcgatcatcaacgtcgacccggcccactacgccatctactcgcagaaa
gagttcttctggaacaatatcaagcagcctaaccgcaacctgctgctgtggcgtgacaag
accgtcgatggcctgaaaaccggtcacaccgacgaagccggctactgcatggtggcgtcg
gccgttcgtgacggccagcgcctgatcgcagtggtgttcggtaccaacagcgaacaatcg
cgtgctgccgaaacccagaagctgctgacctacggtttccgcttcttcgaaacccagacc
ttctaccagaagggcaccgagctgacccaggccccggtctggaagggcgctaccagccag
atcaaggctggcctggctgacgacctgaccatgactatgcctaaaggccaattgaagcgt
ctgcaggcttcgatgaccatgaacccgcagctcaccgcaccgatcgccaaaggtgacgtg
atcggcaaagtggaagtcaaactggacgagaaagtggttcacagcgccgacctgatcgcc
cttgatggcgtcgaggaaggtggtttcttccgccgtatgtgggatagcatccgtctattc
ttctacgggttgttcaactga
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