Pediococcus pentosaceus ATCC 25745: PEPE_0005
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Entry
PEPE_0005 CDS
T00409
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ppe
Pediococcus pentosaceus ATCC 25745
Brite
KEGG Orthology (KO) [BR:
ppe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppe03032
]
PEPE_0005
03400 DNA repair and recombination proteins [BR:
ppe03400
]
PEPE_0005
Enzymes [BR:
ppe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PEPE_0005
DNA replication proteins [BR:
ppe03032
]
Prokaryotic type
DNA Topoisomerases
PEPE_0005
DNA repair and recombination proteins [BR:
ppe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PEPE_0005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
GyrB_hook
Phasin_2
Motif
Other DBs
NCBI-ProteinID:
ABJ67116
UniProt:
Q03I56
LinkDB
All DBs
Position
4284..6230
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AA seq
648 aa
AA seq
DB search
MADEKETKAELAREYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEA
LAGFADKIDVIVEKDNSITVTDNGRGIPVDIQKKTGKPALETVFTVLHAGGKFGGGGYKV
SGGLHGVGASVVNALSTELDARVMKDGKIYYIDFALGKVKTPMKTIGDTEHPDDHGTIVH
FVPDPDIFQETTTYDINILKTRIRELAFLNKGLRITLKDMRPEKPTEDDFLYEGGIRHYV
EYLNEGKEVIFPEPIYVEGVTKGITVEVAMQYIEGYQSKLLTFTNNIHTYEGGTHEEGFK
RALTRVINDYAKNNNILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDAR
TAVNEVFAETFNKFLLENPKVARQIVDKGILAAKARVAAKRAREVTRKKSGLELNNLPGK
LADNTSKDPSISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKATLDRVLANEE
IRSLFTALGTGFGEDFDVSKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAGFV
YIAQPPLYQVRQGKMIQYIDSDEELETVLGQLSPSPKPVIQRYKGLGEMDAEQLWETTMN
PENRRLLRVSAEDADAASGDFEMLMGDKVEPRRKFIEENAVFVKNLDI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
ttggcagacgaaaaagaaacgaaagcagaattagccagagaatatgatgcgagtcaaatt
caggttttagaggggctcgaagcagttcgtaaacgcccagggatgtatattgggtcgact
agttctcaaggactacaccatttggtttgggaaattattgataatggtattgatgaagct
cttgcaggatttgcagacaaaattgatgtgatcgttgaaaaagacaatagcattaccgtc
actgataatggacgtgggattccggttgatatccaaaagaaaactggaaaaccagcttta
gaaacagtctttacggtcctacatgccggaggtaaattcggcggtggcggttataaagtt
tctggaggattgcatggtgtgggtgcatccgttgtaaatgcgttatcaacggaattagat
gcgcgcgtcatgaaggacggtaaaatctactacattgattttgcgctaggaaaagtaaaa
acaccgatgaaaacgattggtgatactgaacatcctgacgatcatggaactattgttcat
ttcgttccagatccagatattttccaagaaactaccacatatgacattaatatcttaaaa
acacgaattcgtgaattagcctttttgaacaagggtctacggattactttgaaggatatg
cgtcctgaaaagccaactgaagacgacttcttgtacgaaggtgggattcgccactacgtt
gaatacttaaacgaaggcaaagaagtaattttccctgaacctatctatgttgaaggggtt
acaaaaggtatcactgttgaagtagctatgcaatatatcgaaggttatcaaagtaaattg
ttaacttttactaacaatattcatacctacgaaggcggtacccacgaagaaggtttcaaa
cgtgctttaacacgagttattaacgattacgctaaaaacaacaatattttaaaagaaaat
gatgataaattgtctggtgatgatgttcgagaaggtttgacggcagtagtcagcgttaag
catcctgatcctcaattcgaaggacaaacgaaaacaaaattgggtaactcagatgctcgg
acagctgttaacgaagtgtttgctgaaactttcaataaattcttattggaaaatcctaag
gttgcacgtcaaattgttgataagggaatcttggcagcaaaagcacgagttgccgctaaa
cgagctcgtgaagttacgcgtaagaagagtggcctagaactcaataatcttcctggtaaa
ttagctgataatacttctaaggatccttcaattagtgaattattcattgtcgagggtgat
tctgccggtggtagtgctaagtccggacgttcgcgtctcacacaagctattttgccaatt
cgtgggaagattttgaacgttgaaaaagccactttggatcgggttttggccaatgaagaa
attcgttcactctttacagcgctcggaactggatttggtgaggactttgatgtaagtaaa
gccaactatcataaattgattatcatgaccgatgccgatgtcgatggtgctcatattcgg
acactattattgacgctgttctatcgttacatgcgtccaatgattgatgcaggatttgtt
tacattgctcaaccaccgctctaccaagtacgtcaaggtaagatgatccaatatatcgat
tctgatgaagaattagaaacagtacttggacaattatcaccatcaccaaaacctgtaatt
caacgttataaaggtcttggtgaaatggatgctgagcaactttgggaaacaaccatgaat
ccagaaaatcgacgcttgttacgagtttcagccgaagatgctgatgctgcaagtggtgat
tttgaaatgttgatgggtgacaaggttgaaccacgtcgtaaattcattgaagagaacgct
gtgtttgttaaaaacttggatatctaa
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