Pelodictyon phaeoclathratiforme: Ppha_2366
Help
Entry
Ppha_2366 CDS
T00731
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
pph
Pelodictyon phaeoclathratiforme
Pathway
pph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ppha_2366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pph03400
]
Ppha_2366
DNA repair and recombination proteins [BR:
pph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ppha_2366
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ppha_2366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
AAA_16
Phage_Mu_Gp48
UB2H
Asp23
AAA_5
NleF_casp_inhib
Motif
Other DBs
NCBI-ProteinID:
ACF44558
UniProt:
B4SED9
LinkDB
All DBs
Position
complement(2449729..2451825)
Genome browser
AA seq
698 aa
AA seq
DB search
MEGVKIIIKFGELFMEVNGSGIYKIVSPYSPAGDQPKAIEALCDGVRSGNPYQTLLGVTG
SGKTFTISNVIARFDRPVLVMSHNKTLAAQLYGELKQFFPDNAVEYFISYYDFYQPEAYL
PSLDKYIAKDLRINDEIERLRLKATSSLLSGRKDVIVVSSVSCIYGLGSPEDWKAQIVEL
RSGMEKDRDLFLKELISLHYIRDDVQPSSGKFRVRGDIIDLVPAHEELALRIEFFGSEIE
SIQTFDIHSGEVLGVEDYAFIYPARQFVADEEKLKVAMLAIENELAERLNYFRSENRLLE
ARRIEERTRYDLEMMKELGYCSGIENYSRHLSARPPGERPCCLLDYFPSDFLVIIDESHV
TLPQIRGMYGGDRSRKTILVEHGFRLPSALDNRPLRFEEFEEMASQVICVSATPSEHELL
RSGGVVVEQLVRPTGLLDPPVEVRPVTGQIDNLLAEIRIHTAKGNKVLVMTLTKRMSEDL
HDFFRKTGIRSRYLHSEIKSLERMQILRELRVGDIDVLVGVNLLREGLDLPEVSLVAILD
ADKEGFLRNTRSLMQIAGRAARNVDGLVVLYADVVTRSIREVLDETARRRTIQQRYNEEH
GITPRSIIKSVDQILDTTGVADAEERYRRKRFGLEPKPERVLSGHIDTLTPEAGYALAAE
LRLEMQEAAVQMEYEKAAYLRDEITKLEQALERLPAGE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagtgaaaataattatcaagtttggagagttgtttatggaggtgaacggaagc
ggaatatataaaattgtcagtccttacagtcctgccggcgatcagccgaaagccatcgag
gcgctttgcgacggtgtaaggtcggggaacccctaccagacgttgcttggtgtcactggc
tcgggcaagacctttaccatttcgaacgttattgcccgtttcgacaggccggttctggtg
atgagccataacaagacgcttgctgcccagttgtatggggaactcaaacagtttttcccc
gacaatgcggtcgagtattttatcagttattacgatttttatcagcctgaagcctatctc
ccctctctcgacaagtatatcgccaaagatctgcgtatcaacgacgaaattgaacggctt
cggctcaaggcgaccagctccctgctcagtggcaggaaggatgtgattgtggtgagttct
gtcagttgtatttatggtctgggctctcctgaagactggaaagcgcagattgtggaactg
cgttccggaatggagaaggatcgggatctttttttgaaggagctgatttctctccattac
attcgtgatgatgtgcagccgagttcggggaagtttcgtgtgaggggggatattatcgat
cttgtccctgcacatgaggagcttgctctgcgcatcgagttttttggctccgagattgaa
agtattcagacctttgatattcatagcggagaggtgcttggggttgaggattatgccttc
atctatccggcccgccagtttgttgctgacgaggagaagcttaaggttgccatgctcgct
attgaaaatgagcttgccgagaggctgaactattttcgttctgaaaatcgtcttcttgag
gctcgcaggattgaagaacgtacccgttatgaccttgagatgatgaaggagcttggctac
tgttccggtattgaaaattattcaaggcatctttcggctcgccctcccggtgagcgcccc
tgttgtctgcttgactattttccttcggactttctggtcatcattgatgaatcccatgtg
acgctgccgcagatacgggggatgtatgggggagaccgttcccgtaaaaccattttggtt
gagcatggtttccggttgccttccgctctcgataatcgtccgctgcgtttcgaggagttt
gaggagatggcgtcgcaggttatctgtgtcagcgctactccgagtgaacatgaactgctg
cgctcgggtggtgtggtggtggagcagcttgtccgtcctaccggtctgcttgatcctccg
gtggaggttcgtcctgttacaggccagatcgacaaccttctggccgaaatccgtattcat
accgccaagggcaataaggttctggtcatgacgctgaccaaaagaatgtcggaagatctg
catgactttttcagaaagacaggtattcgttcgcgttatctgcattcggagatcaagagt
ctggagcggatgcagattcttcgtgagctcagggtaggggacattgacgtgcttgtcggg
gtcaaccttcttcgtgaagggcttgatcttccggaagtttctcttgttgcgattcttgat
gccgacaaggagggctttttgcgcaatacccgttcgcttatgcagatcgcaggcagggcc
gcccgcaacgttgatggtctggttgtgctctatgccgatgtggtaacccgttccattcgt
gaagtgcttgatgaaactgcccggcgtcgtaccatccagcaacgctacaacgaagagcac
ggcattactccccgttcaatcatcaaatcggttgaccagattctcgacaccaccggtgtg
gctgatgccgaggagcgttaccggagaaagcgcttcggtcttgagccgaaacctgagagg
gtgctttccggtcatattgatacactgactcctgaagcgggttatgccctcgcagcggaa
ctccgccttgaaatgcaggaagctgctgttcagatggagtatgaaaaggcagcttatctg
cgtgatgaaatcacaaagctggaacaggctctggagcgattaccggcaggagaataa
DBGET
integrated database retrieval system
