Pseudomonas putida ND6: YSA_06480
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Entry
YSA_06480 CDS
T02170
Name
(GenBank) ECF subfamily RNA polymerase sigma-24 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
YSA_06480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppi03021
]
YSA_06480
Transcription machinery [BR:
ppi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
YSA_06480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
Sigma70_r4
HTH_DeoR
HTH_23
HTH_11
HTH_38
HTH_7
HTH_29
HTH_31
HTH_22
HTH_6
HTH_20
HTH_28
HTH_IclR
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AFK70261
UniProt:
I3UXP0
LinkDB
All DBs
Position
complement(3484734..3485249)
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AA seq
171 aa
AA seq
DB search
MQINDTLKPTEVALLYQSHHAWLRGWLRSRVGCSEHAADLAQDTFVRLLRARHVSPLKEP
RAYLSSIARGLMIDQFRRRALERAYQESLAHLPEAEVPSEEDKLVILDSLERLDRALHQL
KPRVRQAFLLAQLDGLSIVQVAQRLEVSRATVERDLAKALGVCYRLRYADA
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcaacgacacgctcaagcccaccgaggtcgctctgctctaccagtctcaccat
gcctggttgcgtggttggttacgcagccgggtcggttgcagtgaacatgccgcagacctg
gcccaggataccttcgtgcggttgttgcgcgcccgccacgtgtcgccgctcaaagaaccg
cgcgcctacctcagcagcatcgcccgtggcttgatgatcgaccagttccgccgccgcgcg
ctggagcgggcctaccaggagagcctggctcacctgcccgaagcagaagtgcccagcgaa
gaggataagcttgtcatcctcgatagcctggaacgcctcgaccgcgccttgcaccagttg
aaaccgcgcgtccgccaagcgttcctgctggcccagctagacggtttgagcatcgtgcag
gttgcccaacgtctggaggtgtccagggccaccgttgagcgcgatctggccaaggccctg
ggcgtctgctaccggttgcgctatgccgatgcctga
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