Pseudoalteromonas piscicida: B1L02_05420
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Entry
B1L02_05420 CDS
T04942
Symbol
rpoE
Name
(GenBank) RNA polymerase sigma factor RpoE
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
ppis
Pseudoalteromonas piscicida
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppis03021
]
B1L02_05420 (rpoE)
Transcription machinery [BR:
ppis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B1L02_05420 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
Phage_antitermQ
HTH_16
HTH_28
Motif
Other DBs
NCBI-ProteinID:
ASD66519
UniProt:
A0A0F4NYT6
LinkDB
All DBs
Position
1:1129090..1129671
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AA seq
193 aa
AA seq
DB search
MSEQDLDLDIVKRVQQGDKNAFNLLVAKYQNKVAALISRYVANQGDVADVAQETFIKAYR
ALPNFRGESAFYTWLYRIAVNCSKNYLVALGRKPPANDVDAEEAEFYDGADQLRSNASPE
NLLLSDEVKAVIFKTIERLPDDLKTAITLREIEGMSYEEIAVIMDCPVGTVRSRIFRARE
AIDNNLNPLIGES
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcaggatttagatctagatatagttaaacgcgttcaacagggagataaaaac
gcattcaacctgttagttgccaagtatcaaaataaagtcgcagcgcttatttctcgttat
gtagcgaatcaaggtgatgtggcagatgtggcacaggaaacgttcattaaagcttatcga
gcgttgcctaactttaggggcgaaagcgcattttatacttggttgtatagaatcgcggtt
aactgttcaaaaaattatttggtggcgcttggtcgaaagccgccagcaaacgacgtagac
gcggaagaagccgagttttatgatggtgcagaccaactgagatcgaacgcttcaccggaa
aatctattgttaagcgacgaagtgaaagcagttattttcaaaaccattgagcgcttgcct
gacgacttaaaaaccgcaattactttgcgtgaaatcgaaggtatgagctacgaggaaata
gctgtcattatggattgtccggttggtacagttcgttcgagaatttttcgcgcaagggaa
gcgatagataacaatttgaacccattaataggtgagtcttaa
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