Paenibacillus polymyxa SC2: PPSC2_00680
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Entry
PPSC2_00680 CDS
T01335
Symbol
rpoE1
Name
(GenBank) DNA-directed RNA polymerase subunit delta
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PPSC2_00680 (rpoE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppm03021
]
PPSC2_00680 (rpoE1)
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_00680 (rpoE1)
Transcription machinery [BR:
ppm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PPSC2_00680 (rpoE1)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PPSC2_00680 (rpoE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARE-HTH
DUF4777
Mnd1
BUD22
Motif
Other DBs
NCBI-ProteinID:
ADO54125
UniProt:
E3EF02
LinkDB
All DBs
Position
167907..168458
Genome browser
AA seq
183 aa
AA seq
DB search
MSTPLNLKIDPEKVHETPMVDLAFMVLKAANTPYYYRDLMNEVAKLRGLSDEEINDVIAQ
LYTEINIDGRFACVGTNLWGLKRWYPVDKSEDALTGAKRPRIINDEDDDDEDDYHEEEET
YNSDDDFDADSEDEDGEDELFDGEDDDDSDDDVVIDDEDLSDEEDTDDENDDESIEDDDD
SLR
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacaccactcaacttgaagattgacccggagaaagtccacgagactccaatggtg
gatttggcatttatggtattgaaagcagccaatactccatattattaccgtgacctgatg
aatgaagtcgccaaattgcgcggcttgtccgacgaagaaattaatgacgttattgctcag
ctatatactgaaatcaacattgacgggcgttttgcctgtgtcggtacgaatttgtggggc
ttgaaacgttggtatccggtagataaatccgaagatgccctgacaggcgccaagcgtcct
cgtattattaacgatgaagacgatgacgatgaagatgactatcatgaggaagaagaaaca
tacaactccgatgacgacttcgatgcagatagcgaagacgaggatggcgaagacgagctg
ttcgacggagaagatgacgatgatagtgacgatgacgtagttattgacgatgaagacctc
agtgatgaggaagatacagatgatgaaaatgatgatgagtcgatcgaagacgacgacgat
tcacttcgttag
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