Pandoraea pnomenusa RB38: DA70_06355
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Entry
DA70_06355 CDS
T03067
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
ppno
Pandoraea pnomenusa RB38
Pathway
ppno02024
Quorum sensing
ppno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DA70_06355
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DA70_06355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppno03019
]
DA70_06355
03036 Chromosome and associated proteins [BR:
ppno03036
]
DA70_06355
Messenger RNA biogenesis [BR:
ppno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
DA70_06355
Chromosome and associated proteins [BR:
ppno03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
DA70_06355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Motif
Other DBs
NCBI-ProteinID:
AHN74129
UniProt:
A0A378YXP4
LinkDB
All DBs
Position
2161376..2161612
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AA seq
78 aa
AA seq
DB search
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPEAEQS
NT seq
237 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaaagggcaacttctacaagacccgtttctgaacgccttgcgtaaggagcat
gttcccgtctcgatctatctggtcaacggtatcaagctgcagggaaacatcgagtcgttc
gaccagtatgtcgtcctgctgcgcaacacggtcacccaaatggtgtacaagcacgccatt
tcgacggtcgtccctgcgcgtccggtgaatttccatccggaagccgagcagtcctga
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