KEGG   Pandoraea pnomenusa RB38: DA70_06355
Entry
DA70_06355        CDS       T03067                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ppno  Pandoraea pnomenusa RB38
Pathway
ppno02024  Quorum sensing
ppno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DA70_06355
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DA70_06355
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppno03019]
    DA70_06355
   03036 Chromosome and associated proteins [BR:ppno03036]
    DA70_06355
Messenger RNA biogenesis [BR:ppno03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DA70_06355
Chromosome and associated proteins [BR:ppno03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DA70_06355
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AHN74129
UniProt: A0A378YXP4
LinkDB
Position
2161376..2161612
AA seq 78 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPEAEQS
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaacttctacaagacccgtttctgaacgccttgcgtaaggagcat
gttcccgtctcgatctatctggtcaacggtatcaagctgcagggaaacatcgagtcgttc
gaccagtatgtcgtcctgctgcgcaacacggtcacccaaatggtgtacaagcacgccatt
tcgacggtcgtccctgcgcgtccggtgaatttccatccggaagccgagcagtcctga

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