Paenibacillus polymyxa SQR-21: PPSQR21_045740
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Entry
PPSQR21_045740 CDS
T03178
Symbol
lig
Name
(GenBank) DNA ligase, nad-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03030
DNA replication
ppq03410
Base excision repair
ppq03420
Nucleotide excision repair
ppq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPSQR21_045740 (lig)
03410 Base excision repair
PPSQR21_045740 (lig)
03420 Nucleotide excision repair
PPSQR21_045740 (lig)
03430 Mismatch repair
PPSQR21_045740 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppq03032
]
PPSQR21_045740 (lig)
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_045740 (lig)
Enzymes [BR:
ppq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PPSQR21_045740 (lig)
DNA replication proteins [BR:
ppq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PPSQR21_045740 (lig)
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PPSQR21_045740 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPSQR21_045740 (lig)
MMR (mismatch excision repair)
DNA ligase
PPSQR21_045740 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PPSQR21_045740 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
DUF669
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AHM68158
LinkDB
All DBs
Position
complement(5153366..5155381)
Genome browser
AA seq
671 aa
AA seq
DB search
MNPMHRMEQLVAELNTYNYHYYTLDDPQISDKEYDVLYDELVALEQTSGLVLPDSPTQRV
GGEILKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIE
LKFDGLTLNLTYTDGQLVQASTRGNGVIGEGILAQVKTIKSVPLTIPFRNGTIEVQGEGI
MNLSVLSKYNETAADPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADGIQFNSHQ
EMMTFLRENHFKVNPYLTYFDNFDDVMEQLIEIEESRAGLDYLIDGAVLKITDMRTREVL
GYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQNCTLNN
AGDIERKNLKFALGARVFIRRSNDVIPEILGKVTSENDGEEIVVPDHCPACGFPLQQRGA
HLFCDNKLGCKPQIVARISHFASRDAMDIETFSDKTAIQLHDELGVREPADLYTLQYDDL
VKLERFGEKKANNLLAALEKSKERDLASFLYALGIPNTGKATTRMLAEHYRDLHKTMSAT
VDELIELPDVGGIVAESIVAFFADPFTQAGIEKMLSLGVRAQAPEAPQAKKTDSFFSGKT
VVLTGTLHQLTRDEAASRLEALGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIED
EDEFIRLLEQE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaacccaatgcacaggatggagcagcttgttgctgaactgaacacatataactatcac
tactatacattggatgatccccagatcagcgacaaagaatatgatgtgctttatgacgaa
ctggtagcgcttgaacagacaagcggtcttgtactgccggattcgccaacacaacgtgtg
ggcggggagatcctcaagggcttcacaccgcatcgccatctcgctccattatggagcctt
gataaagctcagaatatggagcagctgcgtgcatggaatgcgcgtgtcgtgaagctagtc
aatgattacaataccaagaacccagagcaacctttgccatcccccggctatgcgatagaa
ctaaaatttgatggactgacgctgaacctgacatacacggatggacaactggtgcaggct
tccacacgtggtaatggtgtgataggtgaggggatactggcacaggtcaagacgattaaa
tccgtgccacttacaattccttttcgaaatggaacaattgaagtgcagggagaaggaatc
atgaatctttctgtactgtccaaatataatgagactgccgcggacccacttaaaaatgca
cgaaacgctgcagctggtgctttgcgcaacttgaatcccaaagtgacagcagaacgccga
ctgaatgcatttttctacaacgtgggatatgcagacggtatccagtttaacagccatcag
gagatgatgaccttcctgcgtgaaaatcatttcaaggtgaacccatacctgacttacttt
gataattttgatgatgtaatggagcaactgattgagattgaagaatctcgtgcgggattg
gactatcttattgatggggcagtattgaaaattacagatatgcgcacacgtgaggttctc
ggatatactgataaattcccacgctgggcggtggcctataagttcgaagcagaggaaacg
actacggtccttaactcggtcgagtggaatgtaggaagaaccgggaagatcactccactg
gctagggtagaaccggtagagctggcgggagtcactgtacaaaattgtacgctgaacaat
gctggtgacatcgagcgtaaaaacctgaagtttgctttgggggcacgtgtgtttattcgt
cgctcaaacgatgttattcctgagattttgggaaaagtaacatctgagaacgatggagag
gaaattgtggttccagatcattgtccagcttgtgggtttccgctgcagcagcgaggcgct
catttattttgtgacaataagttaggttgtaaaccccaaattgtggcccgcatttctcat
tttgcttcacgtgatgctatggacattgagacgttcagtgataaaacagctattcaactg
catgatgaattgggagttcgtgaaccagcggatctgtatacactgcaatatgatgatctt
gtgaagctggagcggtttggtgagaaaaaggccaataacctcttggcggcactcgaaaag
agtaaggagagagacctggcttctttcctttatgctttgggcataccgaataccggtaaa
gcgacgacacgcatgttggctgaacactatcgtgacttgcacaagacgatgtccgctacg
gtggatgaactgatagaactcccagatgtaggtgggattgtagctgaaagcattgttgca
ttctttgccgatccatttactcaagcagggattgaaaagatgctgtctctaggggtaaga
gctcaggcccccgaagctccacaggcgaaaaagacagacagctttttcagtggcaaaacg
gttgtgcttacaggtaccttgcatcagcttacgcgtgatgaagctgcatcgaggctggag
gcactgggagccaaagttgccggatctgtatcgaaaaagacggatctagtcatagctggt
gaaaaggctgggagcaagctggctaaggcacaacagctcggaattgacaccatagaagat
gaggatgaatttatcagactgttagaacaagaataa
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integrated database retrieval system
