Pseudomonas protegens Cab57: PPC_0752
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Entry
PPC_0752 CDS
T03613
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PPC_0752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_0752
Enzymes [BR:
ppro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PPC_0752
DNA repair and recombination proteins [BR:
ppro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PPC_0752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
BAO60099
LinkDB
All DBs
Position
856381..859833
Genome browser
AA seq
1150 aa
AA seq
DB search
MPDASSLNPGFMVVHGNRLDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEVDDGGGCGIAAAIDVQLPGSFMWQLYRLVLGRDEIPPKSLLDKAPLTWRLMRLLPEL
IDEPHFEPLQRFLTHDSDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGE
TKVLTPANCWQAELWRALLLDVGTEGMAQSRAGVHQRFIERINQLEVAPSGLPSRVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKAGMPQAL
DPQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPNSYRSAFRDGRIDLFSDSQPASMLQQL
QDDILELRPLNETRELWPQVDIQHDQSIRFHIAHSAQREVEILHDQLLARFSAEPDLRPR
DVIVMVPDIDSYAPHIRAVFGQLERDDRRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRARFGVDEADLPTLHRWIEGAGIRWGMNAEQRAELGLPPELEQNS
WRFGLRRMLLGYAVGRSDACDGIEPYDEIGGLDAALIGPLVALLDALQIAYQQLTQPAVP
AEWGERLHNLLEQFFLASNEHDDYLLGQLDDLRETWLETCESVGLQDQLPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLASGWRLPN
EQDSLLEALTQEHPLQPFSARYFHDSDTLFSYAREWQVLHQVREELGAVERLEPYVQDEP
LSLAQLQDFLRNPVRHFFSQRLKVFFEAMEAPLADEEPFVLDALQRYSLSDSLLEAALGD
AAQPEQALQAQAQRLQASGLLPMAGFGECLQRELLEPLPDLLQRYRQLLDLWPTPVTSAL
PVSLELQGVRLEGWLSSLHQRADGGLLAVSAIPNGIGSTKTRKWHRLIKPWVNHLLACAS
GYSLTTALVASDDSLLLPPLEQEVARQILGNLLQAWQAGMRQPLPVAIKTAFAWLGQSDP
DKAAAAARKTYDGDGQNSEGERRQSPALARQFADYNALIADETFSGWAETLYRPLLNAPW
RSALGEEAGA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccggacgcctcgtccctcaaccctggtttcatggtggttcacggtaaccgcctggac
gagttgcgcagcctggtggtcagctggatgcggcgttatcccctggcgcccctggaaaat
gaaattgccctggtacagagcaacggtatcgcccaatggctgaaactggccctggccgaa
gaccccgaagtggatgacggcggtggctgcggtattgccgctgccattgatgtgcaattg
ccgggcagtttcatgtggcagttgtaccgcctggtcctggggcgagacgaaatcccgccc
aaatccctgctggataaagctcccctgacctggcggctgatgcgcctgttgccggagttg
atcgatgagccgcatttcgaacccctgcaacgcttcctgacccacgacagtgacctgcgc
aagcgctatcaattggccgagcgtctggccgatctgttcgaccaataccaggtctatcga
gccgactggctggaggattgggccgccggccgccaccaactgcgcaatggtcgtggtgaa
accaaggtcctgacgcctgccaactgctggcaggccgagctatggcgcgcgctgctgttg
gatgtcggcaccgaggggatggcccagagtcgcgcaggcgttcaccagcgctttatcgaa
cggatcaaccaactggaggtggcgcccagtggcttgccgtcccgagtgatcgttttcggt
atctcttcgctgccggcccaggccctggaggcactggccgggttggcccgcttcagtcag
gtgctgctgtgtgtgcacaacccttgtcgccatcactgggccgatatcgttgccgacaag
gacctgctgcgccaccaatacaaacgccaggcgcgcaaggccggcatgcctcaggccctg
gatccgcaaaccctgcaccagcacgcccacccgctgctggccgcctggggcaagcaaggc
cgtgactacatcaacctgctggacagctatgacgatcccaacagctatcgcagcgctttt
cgcgatggccggatcgatctgttcagtgacagccagccggccagcatgctccagcaattg
caggacgacattctcgagctgcgcccgctgaacgaaacacgtgagttgtggccgcaggtc
gatatccagcacgaccaatcgatccgttttcacattgcccacagcgcccagcgagaagtg
gagatccttcacgaccagctcctggcgcgcttcagtgcagagcccgacctgcggccccgg
gatgtgatcgtcatggtcccggacatcgacagctacgccccgcatatccgcgcggtgttc
ggccagctggagcgggatgaccggcgcttcattcccttcaccctcacagaccagggccag
cgtggccgtgacccgctgctgatcgccgtcgagcatctattgaagctgccggacagtcgt
tttccggtcagtgagattctcgacctgctggacgttccagccctgcgtgcgcgttttggc
gttgacgaagccgacctgccgaccctgcaccgctggattgaaggtgccggcatccgttgg
ggaatgaatgccgagcagcgcgcagaactggggctgcccccggaactggagcagaacagc
tggcgtttcggcttgcggcgcatgctcctgggttatgccgtcggccgttccgacgcctgt
gacggtatcgagccttatgacgagatcggtggcctggatgcggcgctgatcggtcccctg
gtcgcccttcttgacgccctgcagatcgcctaccagcaactcacccagccggcggttccg
gcggagtggggcgagcgcctgcacaacctgttggaacagttcttccttgccagcaacgag
cacgatgattacctgctgggacagctcgacgacctgcgggaaacctggctggaaacctgc
gagtctgtgggcctgcaagatcagttgccgctgacggtggtccgcgaagcctggctggcc
ggcctggaccaggggcgcctgtcccagcgtttcctcgccggagcggtgaacttctgcacc
ctgatgccaatgcgcgccatccccttcaagctggtgtgcctgctgggcatgaacgatggc
gattaccccagggcgcagccgcctctggacttcgacctgatggggagcgactaccgcccc
ggcgaccgatcacggcgcgaagacgaccgttacctgctgcttgaagcgctgctctcggct
cgtgaccaactttatgtcagttgggttggccgcagcattcgcgacaacagcgagcgcccg
gcctcggtcctgatcggccagttgcgcgatcacctggccagcggctggcggctgcccaat
gagcaggactccctgctggaggccctgacccaggagcatcccctgcaacccttcagtgcc
cgctatttccacgacagcgacacgctgttcagctacgcccgggagtggcaagtgctgcat
caggtccgagaggaactgggcgcagtcgaacgcctggaaccctatgtccaggacgagccc
ctgagccttgcccagttgcaggatttcctgcgcaacccggtgcggcatttcttcagccaa
aggctcaaggtgttctttgaagccatggaagcaccgctggccgatgaagagcccttcgtg
ctcgatgctctacagcgctacagcctcagcgacagcctgctggaagcggcgctgggcgac
gccgcgcagcccgagcaagccttgcaggcccaggcccagaggctgcaagccagtggcctg
ttgcccatggccggttttggcgaatgcctgcagcgcgaactgctggagcccctgccggac
ctgttgcagcgttatcggcaactgctcgacctgtggccgaccccggtaaccagtgcgctg
cctgtgagcctggaactgcaaggcgtgcgcctggaaggttggctcagcagcctgcaccag
cgagctgatggcgggttgttggctgtgagcgccatccccaacggcatcggctcgaccaag
acccgtaaatggcatcggctgatcaagccttgggtcaatcatctgctggcctgcgccagt
ggttactccttgaccaccgcgctggtggccagcgatgacagcctgttgttgccgccgctg
gagcaggaggtggcccggcagattctcggcaacctgctgcaggcctggcaggccggcatg
cgccagccgctgccggtggcgatcaagaccgccttcgcctggctgggccagagcgacccg
gacaaagccgcggccgctgcacgcaagacctacgatggcgacggccagaacagcgagggc
gaacgccggcaaagcccggccctggcccgccaattcgccgactacaacgcactgatcgcc
gatgaaaccttcagcggttgggccgagaccctttatcgacccctgttgaatgctccctgg
cgttcggcgctcggcgaggaggcaggcgcatga
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