Pseudomonas pseudoalcaligenes: BN5_3936
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Entry
BN5_3936 CDS
T03772
Name
(GenBank) ATP-dependent RNA helicase chl1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppse
Pseudomonas pseudoalcaligenes
Pathway
ppse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
BN5_3936
09124 Replication and repair
03420 Nucleotide excision repair
BN5_3936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppse03021
]
BN5_3936
03400 DNA repair and recombination proteins [BR:
ppse03400
]
BN5_3936
Enzymes [BR:
ppse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
BN5_3936
Transcription machinery [BR:
ppse03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
BN5_3936
DNA repair and recombination proteins [BR:
ppse03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
BN5_3936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
CDM42478
UniProt:
W6R2L4
LinkDB
All DBs
Position
4047253..4049553
Genome browser
AA seq
766 aa
AA seq
DB search
MSLRIAVRELCEFTAKEGDLDLRFTPSPTAQEGMAGHATVVARRGPDYVSELPLIGQFEG
LTVSGRADGFDPEFRLLEEIKTHRGDISRIPANHRLLHWAQVKIYGWLLCQELGFDELDL
AVVYFNVMTQQETVFRERHSAASLGEFFALHCRRYIEWARQEQAHQQARNQALEALEFPY
GEFRHGQRQLAEAVYRAARDGHYLLAQATTGIGKTLGTLFPQLKAMPGQQLDRLFFLSAK
TPGRRLALDALQRLREPDTPLRVLEHVARDKACEHPSKACHGDSCPLAKGFYDRLPAARS
AALKERWLDQQAVRNIAIAHGVCPYYLSQELCRWSDVVVGDYNYYFDLGALLHSLTLINQ
WRVCLLVDEAHNLVERGRGMYSAELDQARFKAMCRDAPRRLKSVLERVDRHWDQLHREQE
VPYQVYPLAPDLLLAALGKAVSAITDLLTDQPEGNGGELLSFYMDAMLFCRLAESFGPHS
LFDINRIEAGNGRGYSALCIRNILPAPFLGPRFEDAHSATLFSATLSPSHYYLDLLGLPE
ETQCLDVASPFSAEQLHVQVVRNLSTRYQHRDASLAPICQLMASQYAERPGNYLAFFSSY
QYLEQVLQELRCDHPQIPVWTQSRQMDEAARQGFIERFQIGGRGIGFAVLGGVFGEGVDL
PGERLIGAFVATLGLAQLNPINEEIRQRMDTLFGNGYDYTYLYPGLQKVVQAAGRVIRTP
EDQGVLYLIDDRFARPEVRRLLPSWWQVELLRLPYKTPTPEPQPDL
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
ttgagcctgcgtatcgccgtgcgcgagctgtgcgagttcaccgccaaggaaggtgacctc
gacctgcgcttcaccccctcgcccaccgcgcaggaaggcatggccgggcacgccacggtg
gtggcccggcgcggcccggattatgtctccgagctgccactgatcggccagttcgagggg
ctgacggtcagcggccgcgccgatggcttcgaccccgagtttcgcctgctggaagagatc
aagacccatcgtggcgacatctcgcgcatcccggccaaccaccgcctgctgcactgggcg
caggtgaagatctacggctggctgctatgccaggagctgggcttcgatgaactggatctg
gcggtggtgtacttcaacgtcatgactcagcaggaaacagtgttccgcgagcgccatagc
gccgcctcactgggcgagttcttcgccctgcactgccgccgttacatcgaatgggcgcgg
caggagcaggcgcatcagcaagcacgcaatcaggcattggaagcgctggagttcccctac
ggcgaatttcgccatggccaacggcaactggcagaagccgtgtaccgcgccgcgcgcgac
ggccactacctgctggcgcaggccaccaccggcatcggcaaaaccctcggcaccctgttc
ccgcagctcaaggccatgcctggccagcagctcgaccgcctgtttttcttgagcgccaag
acgccaggccggcgcctggcgctggatgccctgcaacgcctgcgcgaacccgacacgccg
ctgcgcgtgctggaacacgtggcccgtgacaaggcctgcgaacacccgagcaaggcctgc
catggcgactcctgcccgctggccaagggcttctacgaccgcctgccggcagcacgcagc
gcggcgctgaaggaacgctggctggatcagcaagccgtgcgcaatatcgccatcgcccat
ggcgtgtgcccctactacctgagccaggagctgtgtcgctggagcgacgtggtggtgggc
gactacaactactacttcgacctcggcgccctgctgcacagcctcaccctgatcaaccag
tggcgcgtctgcctgctggtggacgaagcgcacaacctggtggagcgcggacgcggcatg
tacagcgccgagctggatcaggcgcgcttcaaggccatgtgccgcgatgcgccgaggcgt
ctgaaaagcgtgctggaacgggtcgaccgccactgggatcaactgcaccgcgagcaagag
gtgccctatcaggtctacccgctggcgccggacttgctgcttgccgcgctgggcaaggcg
gtcagcgccatcaccgacctgcttaccgaccagcccgaaggcaatggcggtgaactgctc
agcttctacatggacgccatgctgttctgccgcctggcggaaagcttcggcccgcattcg
ctgttcgacatcaaccgcatcgaggcgggcaacgggcgcggctactcggccctgtgcatc
cgcaatatcctgccggcgcccttcctcggcccacgcttcgaggacgcccacagcgccacg
ctgttctccgccaccctcagccccagccactactacctcgacctgctcggcctgccggaa
gagacccagtgcctggacgtcgcctcaccgttcagcgccgaacaactgcacgtacaggtg
gtgcgcaacctgtcgacccgctaccagcaccgcgacgcctcgttggcgccgatctgccag
ttgatggcgagccaatacgccgaacgccccggcaactacctggccttcttcagcagctac
cagtacctggaacaggtactgcaggagctgcgctgcgaccacccgcagatcccggtgtgg
acgcagtcccggcagatggacgaagcggcgcgccagggctttatcgagcgcttccagatc
ggcggccgcggcatcggcttcgccgtgctcggcggtgtattcggcgaaggcgtcgacctg
cccggcgaacgcctgatcggcgccttcgtcgccaccctcggcctggcccaactcaacccg
atcaacgaagaaatccgccagcgcatggacaccctgttcggcaacggctacgactacacc
tacctgtaccccggcctgcaaaaggtcgtacaagccgccggccgggtgatccgcacccca
gaagaccagggcgtgctctacctgatcgacgaccgcttcgcccgccccgaagtccgccgc
ttgctgccgagctggtggcaagttgaactgctgcgcttgccatacaaaacacccacaccc
gagccgcaacccgacctgtag
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