Pseudomonas putida DLL-E4: DW66_4995
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Entry
DW66_4995 CDS
T03439
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
ppud
Pseudomonas putida DLL-E4
Pathway
ppud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DW66_4995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppud03019
]
DW66_4995
Messenger RNA biogenesis [BR:
ppud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DW66_4995
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHZ79492
UniProt:
A0A059V2A0
LinkDB
All DBs
Position
complement(5497269..5498600)
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AA seq
443 aa
AA seq
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MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR
LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR
QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKVDLFCHLLR
KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREIQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE
VLTRQTLPRHEEPDFIPDHRVPMTDASGQVIKKPKKPKKPKENSAKRGLGRWMDSAESGS
AEPAVKAVRKVPSFNGGARKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgccaaactcggcctgatcgaaccgctgctgcgcaccctgcagcaactggac
tacaccaccccgaccccggtgcaggccaaggccatccccgctgtgctggccggccgcgac
ctgatggccgcggcccagaccggcaccggcaagaccgcgggctttgccctgcctgtgctg
cagcgcctggcgctggaaggcgaaaaggtggccagcaactcgatccgcgcgctggtgctg
gtgcccactcgtgagttggccgagcaggtgcacaacaatgtgcgcgagtatgccgagaac
ctgccgctgagcacctacgcggtgtatggcggggtcagcatcaacccgcagatgatgcgc
ctgcgccgtggcgtcgacctgctggtggccaccccggggcgcttgctcgacctgttccgg
cagaacgccgtgaagttcaaccaggtgcagaccctggtgctggacgaagccgaccgcatg
ctcgacctgggctttgccgaagagctgcagtcggtgtacgccgcgctgccacgcaagcgc
cagacgttgctgttctccgccactttttccgaccagatccgcatgctggcggggctagcc
ctgaacgacccgctgagcatcgaagtcagcccgcgcaatgccacggccaccagcgtcaag
cagtggctggtgcctgtggataaaaaacgcaaggtcgacctgttctgccacctgctgcgc
aagcagcgctggaagcaggtgctggtgttcgccaagacccgtaatggcgtcgatcaactg
gtggagcgcttgctggccgagggtgtgaatgccgacggtatccacggtgaccgcccgcag
gccactcgccagcgcgcgctggacagcttcaaggcccgcgaaatccaggtgctggtggcg
accgatgtggcggcccgcggcctggatatcgatgacttgccgctggtggtcaaccttgac
ctgccgatcgttgctgaggattacgtgcaccgcatcgggcgtaccgggcgggcgggcaac
aagggcgaggctatctcgctggtgtgtgccgatgaagtgcagctgctggcggcgatcgaa
gtgctgacgcggcagaccctgccgcgtcatgaagagccggacttcatccctgaccaccgg
gtgccgatgaccgacgccagtggccaggtgatcaagaagccgaagaagcccaagaagccg
aaggaaaacagcgccaagcgcggcttggggcgctggatggacagcgctgaatcaggcagt
gcggagccggcggtgaaggcagtgcgcaaggtgccgagcttcaatggtggggcgcgcaag
cgtaagccgtag
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