Pseudomonas putida HB3267: B479_08365
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Entry
B479_08365 CDS
T02389
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B479_08365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuh03400
]
B479_08365
Enzymes [BR:
ppuh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B479_08365
DNA repair and recombination proteins [BR:
ppuh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B479_08365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
AGA72585
LinkDB
All DBs
Position
complement(1877177..1880626)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPVTTALHRLAPT
RFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFR
RSAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPADTQVFSLPGVEQAAEHFWNDVRG
RYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSTEDLDPGVGRERFPARALPNL
AIEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVDGWADFITG
SERLAITIAPLDEGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFP
FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVANAAADLAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKV
DAGPNGGKIEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEAL
FERLTPQPA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaat
ctacccggtgccgccctcagcctggccatcgccgaggccgccagcagcgcgggccgcttc
actttgctgctgacagccgacagccaggctgccgatcgtctggaacaggaacttcgcttc
tttgccccggacctgccggtgctgccgttccccgattgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctctaccgcctgcccgag
ctgagccacggcatcctcgtggtgccggtcaccaccgccctgcaccgcctggcgccgacc
cgcttcctgctgggcagcagcctggtgctggacgtgggccagaccatcgatgtggagcag
atgcgcctgcgcctggaggccagtggctatcgctgcgtcgacaccgtctacgagcatggc
gagttcgccgtgcgcggcgcgttgatcgacctgttcccgatgggtagcaagctgccctac
cgtatcgacctgttcgatgacgagatcgagacgctgcgcaccttcgaccccgagacccag
cgctcgatcgacaaggtggattcggtgcgcctgctgccggcgcgcgagttcccgatgcag
aaagaggaagtgacccgcttcaaggcgcgcttccgcgaacgcttcgatgtcgatttccgc
cgcagcgcgatcttccaggacctggccagcggtatcatccccgccggcatcgagtactac
ctgccgctgttcttcgaagaaacctcgaccctgttcgactacctgccggccgacacccag
gtgttctcgctgcccggcgtggaacaggccgccgaacacttctggaacgacgtgcgcggg
cgttatgaagaccgccgtggcgacctgagccggccgctgctgccgccggccgagctgttc
ctgccggtggaagactgctttgcccggctcaagcaatggccacgggtagtggtcagcacc
gaagacctcgacccgggcgtgggtcgcgagcgcttcccggcacgcgccctgcccaacctg
gcaatcgaagccaaggccaaccagcccctggccgaactggccaacttcctcgaccagttc
cccggccgggtgttgttcaccgccgaatcggcgggccgccgcgaagtgctgctggagctg
ctcgagcggctgaaactgcgcccgcataccgtcgacggctgggccgacttcatcaccggc
agcgaacgcctggcaatcaccatcgccccactggacgaaggcctgctgctggacgaccca
ggcctggccctgatcgccgaaagcccgctgttcggccagcgagtcatgcagcgccggcgc
cgcgacaagcgtggcgaaaccgccaacgacgcggtgatcaagaacctgaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccatggcgtgggccgctacctgggcctggccacc
ctggaaatcgacggccaggccgccgaattcctcaccctggaatacgccgagggcgccaag
ctgtacgtgccggtggccaacctgcatctgatcgctcgctacaccgggagcgacgatgcc
ctggcaccgctgcaccggctgggctcggaggcctggcagaaggccaagcgcaaggccgcc
gaacaagtgcgcgacgtcgccgccgaactgctcgatatctatgcccgccgcgccgcgcgc
aaaggctatgcatttgccgacccgtccgccgactacgccaccttcagcgccggcttcccg
ttcgaggaaaccccggatcagcaggctgccatcgaagccgtgcgtgccgacatgctggcg
cccaagccgatggaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgcagcgttcatcgccgtacacagcggccgccaggtggccgtgctggtgcccacc
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccggtg
accgtggaggtgatgagccgcttcaagtcggccaaggaagtggccaacgccgccgccgat
ctggccgaaggcaagatcgacatcctcatcggcacccacaagctgctgcaggacgatgta
cgcttcaaggacctgggcctggccatcatcgacgaagagcaccgctttggcgtgcgccag
aaggaacagctcaaggccctgcgcagcgaagtggacatcctcaccctcaccgccacgccg
atcccgcgtacgctgaacatggcggtggcgggcatgcgcgacctgtcgatcatcgccacg
ccgccagcgcgccgcctgtcggtacgcaccttcgtcatggagcagaacaagagcacggtc
aaggaggcgctgctgcgcgagctgctgcgcggtggccaggtgtactacctgcacaacgat
gtgaaaaccatcgagaaatgcgccgccgaccttgccgaactggtgccagaggcgcgcatc
ggtatcggccacgggcagatgcgcgagcgcgagctggaacaggtgatgagcgatttctac
cacaagcgcttcaacgtgctggtggcctcgaccatcatcgaaaccggcatcgacgtgccc
agcgccaacacgatcgtcatcgagcgcgccgacaagttcggcctggcccagctgcaccag
ctgcgcggccgtgttggccgaagccaccaccaggcctacgcctacctgctgacgccaacc
cggcagaaggtcagcgccgacgccgaaaaacgcctggaggcgatcgccaacacccaggac
ctcggtgccggcttcgtgctggccaccaacgacctggagattcgcggagccggcgagctg
ctgggcgaaggccagagcgggcagatccaggcggtgggctttaccttgtacatggaaatg
ctcgaacgcgcggtcaaggcgatccgcaagggtacccagcccaaccttgagcagccgctg
ggtggtggtccggaaatcaacctgcgcctgccggcactgatccccgaggactacctgccc
gacgtgcatgcacggctgatcctgtacaagcgcattgcctcggccgccgatgaagaaggc
ctcaaggacctgcaggtggaaatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctgatgcgcctgacctcgctcaagctgcacgcggaaaagctcggcatcaagaaagtc
gacgccggccccaacggcggcaagatcgagttcgaggccgagaccccggtcgacccgctg
accctgatcaagctgattcagggccagcccaaacgctacaagttcgaaggcgccacccag
ttccgtttcctggtgcccatggagcgccccgacgaacgtttcaataccctggaggcgctg
ttcgagcgcctgaccccacagcctgcctaa
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