Pseudomonas putida DOT-T1E: T1E_0849
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Entry
T1E_0849 CDS
T02181
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
T1E_0849 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppx03400
]
T1E_0849 (recB)
Enzymes [BR:
ppx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
T1E_0849 (recB)
DNA repair and recombination proteins [BR:
ppx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
T1E_0849 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
AAA_25
MinC_N
PHBC_N
Motif
Other DBs
NCBI-ProteinID:
AFO46707
UniProt:
I7BRG0
LinkDB
All DBs
Position
complement(960054..963728)
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AA seq
1224 aa
AA seq
DB search
MTQDRPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVV
TFTDAATKELRERIRARLAEAARFFRGELEGADPLLHQLRDDYPQENWPRCAGRLEIAVQ
WMDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLETDHSELLGQVMRDYWRRFCYGMQGDA
LAWVRGNWGSPDALLPRIRPLFGRVRAQQDGPEPAALIQASLQQRGAQLARIKAPWAQWA
EELRQICRDALAAKQVDGRKMQARYFEPWFDKLCAWASDEQLVELDLGTGFTRLTPAGMA
EAWKGEPPEHPALNAMQHLQQQLQALDSPDAPLLEHAASWVSARFEVEKRRRAEMGFDDM
LVRLQHALASEAGERLASLIREQFPVALIDEFQDTDPVQYGIFERIYQISENRAETGLFM
IGDPKQAIYAFRGADIYTYLAARRATSGRLHSLDTNYRSSKAMVAAVNQVFLQAEGREAG
RGAFLFREADDNPLPFIEVRAKGRGEQLLIDGEVSAALQCWQLESEEPVSSSVYRQQLAA
SCASHIVALLNGGQQGTAGFQNAEGELRACLPSDIAILVRDGHEAQMVRAELAAREVRSV
YLSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDRLNQDERVWE
SWVMRFRLYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLLHLAELLQQAAG
ELDGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFICT
SKPVDGSRLPLAWHDSEGNAHLTLTPDQEQIERADDERLAEDLRLLYVALTRAQHACWLG
VADLKRGNQKSSQLHRSAFGYLLGGGLALAGSAQLTDWLQALAAKCPHITCPGLPQADEQ
MYRMPHAERELLPARRPRHAAAEHWWIASYSALRVGDQTLGADSSQAQQLLDDEVPDAQV
LREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFSEVSGNPQLIERTVGQRCNRRDWA
GWIPTLSHWMQRLLGEALPLPGSDQSVTLGQLRHYQIEMEFWFASHRVDAEQLDRLVAHH
THPGLARPAAQPTVLNGMFKGFIDLAFELDGRYYVTDYKSNWLGADIQAYDAMAMEKAIL
EHRYDLQYVLYLLALHRQLRARLADYDYDRHVGGALFIFLRGASSSGHGVYHAKPPRELI
ESLDALFRGEHAPVQQDLFAGVAP
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaccgtcctctggcactgagtttccccctgcacggtagccagctgatcgaa
gccagcgccggcacgggcaagacctttaccatttcggcgctgtacctgcgcctgatcctc
ggtcacggtggcgaacagggcttcgagcgcgagctgctgccaccgcagatcctcgtggtg
accttcaccgacgccgccaccaaagagctgcgcgagcgtatccgcgcccgcctggctgaa
gccgcacggttcttccgtggcgaactggaaggggccgatccgctgttgcaccaactgcgt
gacgattacccacaagagaactggccgcgttgcgccggccggttggaaatcgccgtgcag
tggatggacgaggctgcggtatcgaccatccatggctggtgccagcgcatgctgcgcgag
catgccttcgacagcggcagcctgttcacccagaccctggaaaccgaccacagcgagttg
ttgggccaggtcatgcgcgattactggcggcgcttctgctatgggatgcaaggtgacgca
ctggcctgggtgcgcggcaactgggggagtccagacgccttgctgccgcgcattcgccca
ctgttcggccgtgtgcgcgcccagcaggatgggccagagcccgccgcattgatccaggca
tcgctgcagcaacgtggtgcacagttggcccggatcaaggcgccatgggcacagtgggcc
gaggaactgcggcaaatctgccgcgatgcgctggccgccaaacaggtcgacggccgcaag
atgcaagcccgttacttcgagccctggttcgacaagctctgcgcttgggccagcgatgag
caactggtagagctcgacttgggcaccggctttacccggctgaccccggcgggcatggcc
gaggcctggaagggagaacctcccgagcacccagccctcaacgccatgcagcacttgcag
caacaactgcaggccctggacagcccggatgcccctctgctcgagcacgcggccagttgg
gtatcggcacgtttcgaagtggagaagcgccggcgtgcagaaatgggcttcgacgacatg
ctcgtgcgcttgcagcacgcactcgccagcgaggccggcgagcgcctggccagcctgatc
cgtgagcagttcccggtagcgctgattgacgaattccaggacaccgacccggttcagtac
ggcattttcgagcgcatctaccagatcagtgaaaaccgcgccgaaaccggtctgttcatg
atcggggaccccaaacaggcgatctacgccttccgcggtgccgacatctacacctacctt
gcggcgcggcgcgccaccagcggccgtctgcacagcctggacaccaactaccgctccagc
aaagccatggtggcggcggtcaaccaggtgttcctgcaggccgaggggcgtgaagcgggg
cggggtgcattcctgttccgcgaggccgatgacaacccgctgccattcatcgaggtgcgc
gctaaggggcgtggcgaacagctgctgattgacggtgaagtcagtgcagccctgcaatgc
tggcagctggaaagtgaagagccagtctccagcagcgtttaccgccagcaactggccgcc
agttgcgccagccatattgtggccttgctcaatggcggccagcagggcacggcgggcttc
cagaatgccgaaggcgaattgcgcgcctgcttgccctcggacattgccatcctggtgcgc
gatggccatgaggcgcagatggtccgcgccgaactggccgcacgcgaggtgcgcagtgtc
tacctgtctgacaaggactcggtgtttgccgcccaggaagcccacgacctgctggcctgg
ctgaaggcctgcgccgagcctgactcagagcgcctgctcaaggctgctttggccagcctt
acactgggcctgtcgctggctgcgctggaccggcttaaccaggacgagcgggtctgggag
agctgggtgatgcgctttcgcctttaccgcgacacctggcagcgccaaggggtgttgccg
atgttgcgccacctgctgcatgacttccagctaccgcgtacgctgatccgccgcagtgat
ggcgagcgggtgctgaccaacctgctgcacctggccgagctgctgcagcaggccgctggc
gagctggacggcgaacaggcgcttatccgccacctggccgagcacctggccagttccggt
caggccggtgaagagcagatcctgcgcctggagagcgacgaacagttggtcaaggtggtg
accatccacaagtccaagggcctggaatatcccttggtctacctgccattcatctgcacc
agcaaaccggtggatggtagccgtctgccgctggcctggcatgacagcgaaggtaacgcc
cacctcaccctcacacccgatcaggagcagatcgagcgtgctgacgacgagcgcttggcc
gaagacctgcgcctgctctacgtggccctgacccgcgcccagcatgcttgctggctgggt
gtcgccgacctcaagcgcggtaatcagaagagctcgcagctgcaccgctcggcgtttggc
tacctgctggggggcggcctggccctggctggctcggcgcagctgacggactggttgcag
gcgttggcggcgaagtgcccgcacatcacttgcccaggcctgccgcaggcggatgagcag
atgtatcgcatgccacacgccgaacgtgagctgctgccagcacgcaggccacgccatgcg
gctgccgagcactggtggatcgcttcgtacagtgcccttcgtgtcggcgatcagaccctc
ggcgccgacagctcgcaggcccagcaactgctggatgacgaggtgcccgatgcccaggtg
ttgcgcgaggtcccggccgacagcggcgatatccatcgcttcccacgggggcctaacccc
ggcaccttcctccatggtttgctggagtgggcaggccgtgagggcttcagcgaggtcagc
ggtaaccctcaactgatagagcgtaccgttggccagcgctgcaaccgccgtgactgggcc
ggctggatccctaccctgagccactggatgcaacgtttgctgggcgaggcgttgccgctg
ccgggcagcgaccagagcgtaacgctgggccagctgcgtcattaccagatcgaaatggaa
ttctggttcgccagccaccgggtcgacgcagaacaactcgatcgcctggtggcacaccac
acccaccccggtctggcgcgcccagctgcgcagccgaccgtgctaaacggcatgttcaaa
gggttcatcgacctggcgttcgagctggacgggcgttactacgtgaccgactacaagtcc
aactggctgggtgcggacatccaggcctacgatgccatggccatggaaaaggcgattctt
gagcaccgctacgacctgcagtatgtgctgtacctgctggccctgcaccgccagttgcgc
gcgcggctggcggactacgattatgaccgccatgttggcggcgccctgttcatcttcctg
cgcggtgccagcagcagcggccacggcgtgtaccacgccaagccaccgcgtgagctgatc
gaaagcctcgatgcactgttccgtggcgagcacgcgccggtacagcaggacctgtttgcc
ggagttgcgccatga
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