KEGG   Pseudomonas rhizosphaerae: LT40_00670
Entry
LT40_00670        CDS       T03339                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
prh  Pseudomonas rhizosphaerae
Pathway
prh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:prh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LT40_00670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:prh03019]
    LT40_00670
   03009 Ribosome biogenesis [BR:prh03009]
    LT40_00670
Enzymes [BR:prh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     LT40_00670
Messenger RNA biogenesis [BR:prh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LT40_00670
Ribosome biogenesis [BR:prh03009]
 Prokaryotic type
  rRNA processing factors
   LT40_00670
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 TcdA_TcdB
Other DBs
NCBI-ProteinID: AIS15996
UniProt: A0A089ZPJ6
LinkDB
Position
complement(140786..144205)
AA seq 1139 aa
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKNPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEDKVRES
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPTRTAAPVSAEEA
APVAAAAPTPAPAPQIAEPSLFKGLVKSLVSLFATKEAPAAPVVVEKPAATTTERPAREE
RRNGRQQSRNRSNSRRDEERKPREDRAPREDRSAREDAPAAREERPARAPREERQPRAPR
EDRRPRNGGDDAPRVRELREPLDAPTAREERPAREERAPREERVVREERAPREERAPREE
RPAREERTPGEERPAREERQPRPAREERVAQQNAAESEVGATEEALTNDELLQDDNPEGN
DGDRPRRRSRGQRRRSNRRERQRDANGDVIEGSEESNESATEGESNGAAVAAGVAVTAVV
AQSAISASAEAQAHEQAEQANRSVQPAAAESTAESESLAAPEIVATAPTAEAAVDTPAAA
PAQSDSPAEIERPATVSAPDTWAAPVNESAAPVIEQQPVVEAAKPAETTEPVQQDAAEPV
ELTPPFDTTPTPISPPGADVEVDAPVVVDPAQVSESAFQPPVAQASEEAPSLPVEPALHQ
ISEPAAAEPLSIEPVFVDAVVVEPALVEPVRFEPATSQPVAEPVPASEPVVVAEPEPIQE
AEPAPAVPSNGRAPNDPREVRRRKREAEEAAKNAAFKPEAEVSSAADAQDAHDEPKPQA
NT seq 3420 nt   +upstreamnt  +downstreamnt
atgctgattaacgcaactcaacccgaagagttgcgtgttgccctggtagacggccagcgc
ctctacgacctggacatcgagtcaggcgcccgcgagcagaaaaaggccaacatctataaa
ggccgcatcactcgcatcgaacccagccttgaggccgccttcgtcgacttcggctcggaa
cgccacggcttcctgcccctcaaggaaatctcccgcgaatacttcaagaagaaccccgaa
ggccgcgtcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtccaggtcgag
aaggaagaacgcggcaacaagggcgctgccctgaccacgttcatcagcctggctggtcgc
tacctggtgctgatgcccaacaacccgcgggccggtggcatctcgcgccgtatcgaaggc
gaagagcgcaacgaactgcgtgaagcgctgaacggtctggtcgccccagccgacatgggc
ctgatcgtgcgcactgccggccttggccgcagcagcgaagagatgcagtgggacctggac
tacctgctgcaactgtggaccgcgatcaaggaagcttccctggaccgctccgcgcctttc
ctgatctaccaggaaagcaacgtcatcatccgcgcgatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcgtcgaagcccaagacgaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgttcccctgttc
aaccgcttccagatcgaaagccagatcgagaccgctttccagcgcgtggtcgaactgcct
tccggtggctcgatcgtcatcgacccgactgaagcattggtgtccatcgacatcaactcg
gcgcgcgccaccaagggcagcgacatcgaagaaaccgccctgcagaccaacctcgaagcg
gccgaggaaatcgctcgccagttgcgcctgcgcgacatcggcggcctgatcgtcatcgac
ttcatcgacatgactccggccaagaaccagcgcgccgtggaagacaaggtccgtgaatcg
ctggaagccgaccgcgcccgtgtccaggtgggtcgtatttcccgcttcggtctgctggaa
atgtcccgtcagcgcctgcgtccttcgctcggcgagagcagcggcatcgtctgcccgcgt
tgcagcggcaccggcatcatccgtgacgtcgaatcgctgtcgctggccatcctgcgcctg
atcgaagaagaagccctgaaggaccgcaccgccgaagttcgcgcgcaagtgccgatcccc
gtcgcggccttcctgctcaatgaaaaacgcaactcgatcaccaagatcgaactgcgcact
cgcgctcgcatcgtcatcctgccgaacgatcacctcgaaaccccgcatttcgaagtgcaa
cgcctgcgtgatgacagcccggaagcccacagcggccagtccagctacgaaatcgccgct
gctgccgctgaagtcgaagaagtccagccagccgctgccactcgcaccctggttcgccag
gaagcggcggtgaaaactgcaccgacccgcaccgctgcccccgtttccgcggaagaagct
gccccggtggctgctgcagcaccgacgccggcgcctgctccccagatcgccgaaccgagc
ctgttcaagggcctggtcaagtcgctggtaagcctcttcgccaccaaggaagcgcctgcc
gctccagtggtcgtcgaaaagcctgccgcgactaccaccgagcgcccggcgcgcgaagag
cgtcgcaacggtcgccagcagagccgcaaccgcagcaacagccgtcgcgacgaagagcgc
aagccgcgtgaagatcgtgcaccgcgcgaagaccgttccgcccgcgaggatgcacccgct
gcccgcgaagaacgccctgcccgcgcaccgcgtgaagagcgccagccgcgcgccccgcgt
gaggatcgccgtccacgcaatggtggcgacgacgcaccacgggtacgcgaactgcgtgaa
ccgctcgatgcgccgaccgcgcgtgaagaacgcccggcccgcgaagagcgcgctcctcgt
gaagagcgtgtagtacgcgaagagcgtgcccctcgtgaagaacgtgcgccgcgcgaagag
cgccctgcccgtgaagaacgtaccccaggcgaagagcgtccggctcgcgaagaacgtcag
ccacgccctgcgcgcgaagaacgtgtcgcacagcaaaacgctgccgaatccgaagtcggc
gcgaccgaagaagcactgaccaacgacgaactgctgcaggacgacaacccggaaggcaac
gacggcgaccgcccgcgtcgtcgctcccgtggtcagcgtcgccgcagcaaccgccgcgag
cgtcagcgcgacgccaacggggacgtgatcgaaggctcggaagaatcgaacgagtcggcc
accgaaggcgagtcgaacggtgcagccgtggcagccggcgttgccgtcaccgcagtggtt
gcgcaaagcgccatcagtgcttctgccgaagcccaggcccatgaacaggccgagcaagcc
aatcgaagcgtgcaacctgccgctgccgaaagcaccgctgaaagcgaaagcctggctgcg
ccggagatcgtcgccaccgcgccgaccgccgaagccgctgtcgatacaccagcagctgcg
cccgcccagtcggacagccctgctgaaatcgagcgccctgcgacggtctcggcgcccgac
acctgggccgcgcctgtcaacgaaagcgccgcaccggtgatcgagcaacagcctgtcgtc
gaggcagccaagcctgccgagaccactgagcctgtgcaacaggacgccgccgagccggta
gaactgacgcctccgttcgacaccacgccaacgccgatcagcccacccggcgccgacgtc
gaagtggacgcaccggtagtggtcgatcctgcacaagtcagcgagtctgcgttccagcct
cccgtcgctcaagccagcgaagaagcaccttcgctgccggtcgaacctgccttgcaccag
atcagcgaacccgctgccgctgagccgctgagcatcgagcctgtgtttgtcgatgccgtc
gtggtcgagcctgctttggtcgagccagtcaggtttgaaccggctacttcccagccggtt
gccgaacccgttccggcaagcgagcctgtcgtggtcgctgaacccgagccgatccaggaa
gctgaaccggcgccagccgtgccaagcaatggccgcgcgcccaacgacccacgtgaagtg
cgtcgccgcaagcgtgaagccgaggaagcagcgaaaaacgctgcattcaagcccgaagct
gaagtatcgagcgccgctgacgcgcaagatgctcacgacgagcccaagcctcaggcgtaa

DBGET integrated database retrieval system