Pseudomonas rhizosphaerae: LT40_00670
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Entry
LT40_00670 CDS
T03339
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT40_00670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prh03019
]
LT40_00670
03009 Ribosome biogenesis [BR:
prh03009
]
LT40_00670
Enzymes [BR:
prh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LT40_00670
Messenger RNA biogenesis [BR:
prh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LT40_00670
Ribosome biogenesis [BR:
prh03009
]
Prokaryotic type
rRNA processing factors
LT40_00670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AIS15996
UniProt:
A0A089ZPJ6
LinkDB
All DBs
Position
complement(140786..144205)
Genome browser
AA seq
1139 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKNPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEDKVRES
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPTRTAAPVSAEEA
APVAAAAPTPAPAPQIAEPSLFKGLVKSLVSLFATKEAPAAPVVVEKPAATTTERPAREE
RRNGRQQSRNRSNSRRDEERKPREDRAPREDRSAREDAPAAREERPARAPREERQPRAPR
EDRRPRNGGDDAPRVRELREPLDAPTAREERPAREERAPREERVVREERAPREERAPREE
RPAREERTPGEERPAREERQPRPAREERVAQQNAAESEVGATEEALTNDELLQDDNPEGN
DGDRPRRRSRGQRRRSNRRERQRDANGDVIEGSEESNESATEGESNGAAVAAGVAVTAVV
AQSAISASAEAQAHEQAEQANRSVQPAAAESTAESESLAAPEIVATAPTAEAAVDTPAAA
PAQSDSPAEIERPATVSAPDTWAAPVNESAAPVIEQQPVVEAAKPAETTEPVQQDAAEPV
ELTPPFDTTPTPISPPGADVEVDAPVVVDPAQVSESAFQPPVAQASEEAPSLPVEPALHQ
ISEPAAAEPLSIEPVFVDAVVVEPALVEPVRFEPATSQPVAEPVPASEPVVVAEPEPIQE
AEPAPAVPSNGRAPNDPREVRRRKREAEEAAKNAAFKPEAEVSSAADAQDAHDEPKPQA
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgccctggtagacggccagcgc
ctctacgacctggacatcgagtcaggcgcccgcgagcagaaaaaggccaacatctataaa
ggccgcatcactcgcatcgaacccagccttgaggccgccttcgtcgacttcggctcggaa
cgccacggcttcctgcccctcaaggaaatctcccgcgaatacttcaagaagaaccccgaa
ggccgcgtcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtccaggtcgag
aaggaagaacgcggcaacaagggcgctgccctgaccacgttcatcagcctggctggtcgc
tacctggtgctgatgcccaacaacccgcgggccggtggcatctcgcgccgtatcgaaggc
gaagagcgcaacgaactgcgtgaagcgctgaacggtctggtcgccccagccgacatgggc
ctgatcgtgcgcactgccggccttggccgcagcagcgaagagatgcagtgggacctggac
tacctgctgcaactgtggaccgcgatcaaggaagcttccctggaccgctccgcgcctttc
ctgatctaccaggaaagcaacgtcatcatccgcgcgatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcgtcgaagcccaagacgaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgttcccctgttc
aaccgcttccagatcgaaagccagatcgagaccgctttccagcgcgtggtcgaactgcct
tccggtggctcgatcgtcatcgacccgactgaagcattggtgtccatcgacatcaactcg
gcgcgcgccaccaagggcagcgacatcgaagaaaccgccctgcagaccaacctcgaagcg
gccgaggaaatcgctcgccagttgcgcctgcgcgacatcggcggcctgatcgtcatcgac
ttcatcgacatgactccggccaagaaccagcgcgccgtggaagacaaggtccgtgaatcg
ctggaagccgaccgcgcccgtgtccaggtgggtcgtatttcccgcttcggtctgctggaa
atgtcccgtcagcgcctgcgtccttcgctcggcgagagcagcggcatcgtctgcccgcgt
tgcagcggcaccggcatcatccgtgacgtcgaatcgctgtcgctggccatcctgcgcctg
atcgaagaagaagccctgaaggaccgcaccgccgaagttcgcgcgcaagtgccgatcccc
gtcgcggccttcctgctcaatgaaaaacgcaactcgatcaccaagatcgaactgcgcact
cgcgctcgcatcgtcatcctgccgaacgatcacctcgaaaccccgcatttcgaagtgcaa
cgcctgcgtgatgacagcccggaagcccacagcggccagtccagctacgaaatcgccgct
gctgccgctgaagtcgaagaagtccagccagccgctgccactcgcaccctggttcgccag
gaagcggcggtgaaaactgcaccgacccgcaccgctgcccccgtttccgcggaagaagct
gccccggtggctgctgcagcaccgacgccggcgcctgctccccagatcgccgaaccgagc
ctgttcaagggcctggtcaagtcgctggtaagcctcttcgccaccaaggaagcgcctgcc
gctccagtggtcgtcgaaaagcctgccgcgactaccaccgagcgcccggcgcgcgaagag
cgtcgcaacggtcgccagcagagccgcaaccgcagcaacagccgtcgcgacgaagagcgc
aagccgcgtgaagatcgtgcaccgcgcgaagaccgttccgcccgcgaggatgcacccgct
gcccgcgaagaacgccctgcccgcgcaccgcgtgaagagcgccagccgcgcgccccgcgt
gaggatcgccgtccacgcaatggtggcgacgacgcaccacgggtacgcgaactgcgtgaa
ccgctcgatgcgccgaccgcgcgtgaagaacgcccggcccgcgaagagcgcgctcctcgt
gaagagcgtgtagtacgcgaagagcgtgcccctcgtgaagaacgtgcgccgcgcgaagag
cgccctgcccgtgaagaacgtaccccaggcgaagagcgtccggctcgcgaagaacgtcag
ccacgccctgcgcgcgaagaacgtgtcgcacagcaaaacgctgccgaatccgaagtcggc
gcgaccgaagaagcactgaccaacgacgaactgctgcaggacgacaacccggaaggcaac
gacggcgaccgcccgcgtcgtcgctcccgtggtcagcgtcgccgcagcaaccgccgcgag
cgtcagcgcgacgccaacggggacgtgatcgaaggctcggaagaatcgaacgagtcggcc
accgaaggcgagtcgaacggtgcagccgtggcagccggcgttgccgtcaccgcagtggtt
gcgcaaagcgccatcagtgcttctgccgaagcccaggcccatgaacaggccgagcaagcc
aatcgaagcgtgcaacctgccgctgccgaaagcaccgctgaaagcgaaagcctggctgcg
ccggagatcgtcgccaccgcgccgaccgccgaagccgctgtcgatacaccagcagctgcg
cccgcccagtcggacagccctgctgaaatcgagcgccctgcgacggtctcggcgcccgac
acctgggccgcgcctgtcaacgaaagcgccgcaccggtgatcgagcaacagcctgtcgtc
gaggcagccaagcctgccgagaccactgagcctgtgcaacaggacgccgccgagccggta
gaactgacgcctccgttcgacaccacgccaacgccgatcagcccacccggcgccgacgtc
gaagtggacgcaccggtagtggtcgatcctgcacaagtcagcgagtctgcgttccagcct
cccgtcgctcaagccagcgaagaagcaccttcgctgccggtcgaacctgccttgcaccag
atcagcgaacccgctgccgctgagccgctgagcatcgagcctgtgtttgtcgatgccgtc
gtggtcgagcctgctttggtcgagccagtcaggtttgaaccggctacttcccagccggtt
gccgaacccgttccggcaagcgagcctgtcgtggtcgctgaacccgagccgatccaggaa
gctgaaccggcgccagccgtgccaagcaatggccgcgcgcccaacgacccacgtgaagtg
cgtcgccgcaagcgtgaagccgaggaagcagcgaaaaacgctgcattcaagcccgaagct
gaagtatcgagcgccgctgacgcgcaagatgctcacgacgagcccaagcctcaggcgtaa
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integrated database retrieval system