Xylanibacter ruminicola: PRU_2135
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Entry
PRU_2135 CDS
T01212
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pru
Xylanibacter ruminicola
Pathway
pru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PRU_2135 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pru03021
]
PRU_2135 (rpoB)
03400 DNA repair and recombination proteins [BR:
pru03400
]
PRU_2135 (rpoB)
Enzymes [BR:
pru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PRU_2135 (rpoB)
Transcription machinery [BR:
pru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PRU_2135 (rpoB)
DNA repair and recombination proteins [BR:
pru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PRU_2135 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
DUF5514
Glyco_hydro_80
Motif
Other DBs
NCBI-ProteinID:
ADE83207
UniProt:
D5EUW8
LinkDB
All DBs
Position
complement(2562376..2566188)
Genome browser
AA seq
1270 aa
AA seq
DB search
MASKIIDNRVNFGSVKNPMPFPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFAENFPI
TDTRNNFVLEFLDYYIDPPRYSIDECLERGLTYSVPLKAKLKLYCTDPDHEDFGTVIQDV
FLGPIPYMTANGTFVINGAERVVVSQLHRSPGVFFGQSVHANGTLLYSARVIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFEADKDILQIFNLAEEVKVNKKSLKAVIGCK
LAARVLKSWNEDFVDEDTGEVVSIERNQMIMERETEITEENMMDILESGAQTILVHKDAS
VASDYSIIFNTLAKDPSNSEKEAVLYIYRQLRNADPADDASAREVIQNLFFSDKRYDLGD
VGRYRINKKLGLNTDMDVRVLTKEDIIEIIKYLIQLVNSKATVDDIDHLSNRRVRTVGEQ
LANQFSIGLARMSRTIRERMNVRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTN
PLAEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYA
KINELGFIQTPYRKVENGVADLSDNGIVYLTAEEEAEHIIGQGNAPLNDDGTFIRSVVKC
RQDADFPVVPPTDVDLMDVSPQQIASIAASLIPFLEHDDAHRALMGSNMMRQAVPLLHNE
APIVGTGIEKQVCEDSRTMVTAEGDGVIEYVDATTIRILYDRTEDEEFVSFEPALKEYRI
AKFRRTNQNMTIDLRPICEKGQRVKAGDILTEGYATEDGELALGRNLLVAYMPWKGYNYE
DAIVLNERIVRDDVLTSVHVDEYSLDVRETKRGVEEFTADIPNVSEEATKDLDDNGVIRV
GARVEPGDILIGKISPKGESDPSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVIIDKKM
FQRAIKDRKSKQQDKIVLAKIDEEYEAKVEDLKDILIDKLMELTKGKTSQGVKDYTGAEI
ITKGSKFTATALRNLEYGDVQISNWTTDEHKNELIAKLIINFMKKYKLLDAEMKRKKFAI
TIGDELPNGILQMAKVYVAKKRKIGVGDKLAGRHGNKGIVSKIVRQEDMPFLEDGRPVDL
VLNPLGVPSRMNLGQIFEAILGAAGKKLGVKFATPIFDGAKLEDLAEWTDKAGLPRLCST
HLYDGETGERFDQPATVGITYFLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAFGASHVLQEILTIKSDDTVGRSKAYEAIVKGEPMPTPGIPESLNVLLHEL
RGLGLSITLD
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaaaataatagataacagagtaaactttggcagcgtcaaaaatccgatgcca
ttcccggatttccttgatgtgcaattaaagtcgttcaaagacttcctgcagttggatact
ccgcctgaggaacgcaagaatgacggcttgtataaggtgttcgctgagaacttccctatc
accgatacacgtaataatttcgttcttgagttcttggattactatatcgacccacctcgt
tacagcatcgatgagtgcttggagcgtggtttgacttatagcgtgcccctgaaggctaag
ctgaaactgtattgtactgatccggatcatgaggatttcggaactgtgattcaggatgtg
ttcctgggtcctatcccttacatgaccgccaatggtacattcgttatcaatggagccgag
cgcgtagtcgtttcacagttgcaccgttcacctggcgtattcttcggccagagcgtacat
gctaacggtaccctgctgtattcggctcgtgttatcccattcaagggttcatggatcgag
tttgctaccgacatcaacaatgtgatgtacgcatacatcgaccgtaagaagaagttgccc
gtaacaactctgctgcgtgctatcggtttcgaggccgataaggacatcctgcagatcttc
aacctggccgaggaggttaaggttaacaagaagagcctgaaggctgtgattggctgcaag
cttgctgcccgcgtactgaagagctggaacgaggacttcgttgatgaggatactggtgag
gtagtatcaatcgagcgtaaccagatgattatggagcgtgagactgagattaccgaggag
aacatgatggacatccttgagagtggcgcacagactatcctggtgcacaaggacgcatct
gttgcttcggattacagcatcatcttcaacacactggccaaagacccatctaactctgag
aaggaggctgtgctttacatctaccgtcagctgcgtaatgccgatcctgccgatgatgcc
agcgcacgtgaggttatccagaacctgttcttctcagacaagcgttacgatctgggtgat
gttggtcgttaccgtatcaacaagaagcttggtttgaacaccgatatggatgttcgcgtt
ctgaccaaggaagatattatcgagattatcaagtatctgattcagttggttaactctaag
gctactgtcgacgatatcgaccacctgtcgaaccgtcgcgtacgtaccgtaggcgagcag
ctggctaatcagttctctataggtctggctcgtatgagccgtaccatccgtgagcgcatg
aacgttcgcgataacgaggtgttcacaccaaccgatctgatcaacgccaagactatctct
agcgttatcaactcgttcttcggtaccaaccctctgtcgcagttcatggaccagaccaac
cctctggccgaggttactcacaagcgtcgtctctcagccctgggtcctggtggtctgagc
cgtgagcgcgccggattcgaggttcgtgacgtacactatacacactatggtcgtctgtgt
cctatcgagagccctgagggaccaaacatcggtctgatctcatctctctgtgtatatgct
aagatcaacgagctcggatttatccagactccttaccgtaaggtagagaatggtgttgcc
gacctgagcgacaatggtatcgtttacctcaccgcagaggaggaggctgagcacatcatc
ggtcagggtaacgcacctctgaacgacgatggtacatttatccgctcggttgttaagtgt
cgtcaggatgccgacttccctgtagttccacctacagacgttgacctgatggatgtatcg
ccacagcagattgcctctatcgctgcatctcttatcccattcctggagcacgacgatgct
caccgtgcgctgatgggatctaacatgatgcgccaggccgtacctctgctgcacaacgag
gcacctatcgtaggtaccggtatcgagaagcaggtatgtgaggattcacgtaccatggtt
actgccgagggtgatggtgttatcgagtacgttgatgctacaaccatccgtattctgtac
gatcgcaccgaggacgaggagttcgtaagcttcgagcccgccctgaaggagtaccgtatc
gctaagttccgtcgtaccaaccagaatatgaccatcgacctgcgtcctatctgtgagaag
ggacagcgcgtaaaggccggtgatatcctgactgagggttacgctaccgaggatggtgag
ctggctctgggccgtaacctgctggtagcttacatgccttggaagggttacaactatgag
gatgctatcgtgcttaacgagcgcattgttcgcgacgacgtacttacctctgtacacgtt
gatgagtactcactcgatgtacgtgagaccaagcgtggtgttgaggagttcacagctgat
attcctaacgtaagtgaggaggccacaaaggatttggacgacaacggtgttatccgtgtt
ggtgcccgtgttgagccaggcgacatcctgattggtaagatttcacctaagggtgagagc
gatccttcacctgaggagaagctgctccgtgccatcttcggtgacaaggctggtgatgtg
aaggattcttcactcaaggctaacccatcactgagtggtgttattattgataagaagatg
ttccagcgtgccatcaaggaccgtaagtctaagcagcaggataagatcgtgcttgctaag
atcgacgaggagtacgaggcaaaggttgaggacctgaaggatatcctgatcgacaagctc
atggagctcactaagggtaagacctcacagggtgttaaggactacaccggtgccgagatc
atcaccaagggtagcaagttcactgctacagccctgcgcaaccttgagtatggcgatgta
cagattagcaactggacaacagacgagcataagaacgagctgattgccaagctgattatc
aacttcatgaagaagtacaagctgcttgatgctgagatgaagcgtaagaagttcgctatc
acaatcggtgacgagctgccaaacggcatcctgcagatggctaaggtatatgtagctaag
aagcgtaagatcggcgtaggtgataagctggccggacgtcacggtaacaagggtatcgta
tctaagatcgtacgtcaggaggatatgccattcctcgaggatggtcgtccagtcgacctg
gtactgaaccctctgggtgtgccttctcgaatgaaccttggtcagattttcgaggctatc
ctcggtgctgccggtaagaagctcggtgttaagttcgctacacctatcttcgacggtgct
aagctcgaagaccttgctgagtggactgacaaggcaggtctgccacgcctgtgctctacc
cacctgtatgatggtgagaccggtgagcgtttcgaccagcctgctacagtaggtatcacc
tacttccttaagctcggtcacatggttgaggataagatgcacgcccgttcaatcggtccg
tacagcttgattactcagcagcctcttggtggtaaggcccagttcggtggtcagcgattc
ggagagatggaggtttgggccctcgaggccttcggcgccagccatgttcttcaggagatc
ctgacaatcaagtcggatgataccgtaggtcgctctaaggcttacgaggctatcgttaag
ggcgagccaatgcctacaccaggtatccccgagtctctcaatgtgctgctgcacgagttg
cgtggtcttggtttgagtattaccctcgactaa
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integrated database retrieval system
