Pseudogulbenkiania sp. NH8B: NH8B_3469
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Entry
NH8B_3469 CDS
T01619
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma-70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pse
Pseudogulbenkiania sp. NH8B
Pathway
pse02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NH8B_3469 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pse03021
]
NH8B_3469 (rpoD)
Transcription machinery [BR:
pse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NH8B_3469 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GTP_EFTU
K-box
Motif
Other DBs
NCBI-ProteinID:
BAK78221
UniProt:
G2IZB2
LinkDB
All DBs
Position
complement(3641788..3643710)
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AA seq
640 aa
AA seq
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MAASPENQKDMQDNEQESMSLEDQRKRLRLLIALGKERGYLTYAEINDHLPEDVSDTEQI
ENIVTMITGLGIQVYDEAPDADTLLMSDATPAVADEDAVEEAEAALSSVDSEFGRTTDPV
RMYMREMGSVELLTREGEIEIAKRIEDGLKHMIEAISACPGTISEVLALLDRVEAGDIRV
DEVVDGFIDPNAEVEEEVPFAEPVDPDEVLDEEEEEEEAEEEDAEAISNANLEELKLQSL
EHFALVRALFEELVVVLRKQGNQSEEYRQLQGAITESFMKVRFATRQIESLCESLRSRVN
EIRSYERDIQDICVTRVRMDRAHFIKYFPGNEINTDWVEDEISSGKPWSEALTRFKYAII
EKQTKLAELQDRAMLSIKDLKEINRQMSAGESKARRAKKEMIEANLRLVISIAKKYTNRG
LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE
TINKMNRISRQILQETGHEPDPAELAERMEMPEDKIRKIMKISKEPISMETPIGDDDDSH
LGDFIEDQNNLAPSDAAMYSSLKDATKEVLETLTPREAKVLRMRFGIDMNTDHTLEEVGK
QFDVTRERIRQIEAKALRKLRHPTRSERLRSFLDNEPGNQ
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctctcccgaaaatcagaaagatatgcaagacaacgagcaggaatcgatgagt
cttgaggatcagcgcaaacgcctgcgtttgctgatcgcgctgggcaaggagcgcggctac
cttacctacgccgagatcaacgaccatcttccggaagacgtgtcggataccgaacagatc
gagaacatcgtcacgatgatcaccggtctgggcattcaggtctacgacgaggcgccggat
gccgatacgctgctgatgtccgacgccacgccggcggttgccgacgaagacgcggtggaa
gaagcggaagcggcgctgtcctcggtcgactccgagttcggtcgcaccaccgacccggtg
cgcatgtacatgcgtgaaatgggctcggtcgaactcttgacgcgcgaaggcgagatcgaa
atcgccaagcgcatcgaagacggcctcaagcacatgatcgaggcgatctcggcctgcccg
ggcaccatctccgaagtgctggccttgctcgaccgtgtcgaagccggcgacatccgtgtc
gacgaagtagtggacggtttcatcgatccgaacgccgaggtcgaggaagaagtgccgttc
gccgagccggtcgaccccgacgaggtgctggacgaggaagaggaagaggaggaagccgag
gaagaagacgccgaggccatctccaacgccaatctggaagaactcaagctgcagtcgctg
gagcacttcgcgctggtgcgcgcgttgttcgaggaactggtggtggtgctgcgcaagcag
ggtaaccagagcgaagagtaccgccagctgcaaggcgcgatcaccgagtcgttcatgaag
gtgcgctttgccacgcgccagatcgaaagcctgtgcgagtcgctgcgcagccgtgtcaac
gagatccgctcctacgagcgtgatatccaggacatctgcgtgacccgcgtgcgcatggat
cgcgcccacttcatcaagtacttccccggcaacgagatcaacaccgactgggtggaagac
gagatcagctcgggcaagccgtggtcggaggcgctgacccgcttcaagtacgccatcatc
gagaagcagaccaagctggccgaactgcaggaccgcgccatgctgtcgatcaaggacctg
aaggaaatcaaccgccagatgtcggcgggcgagtccaaggcgcgccgcgccaagaaggaa
atgatcgaggccaacctgcgtctggtgatttccatcgccaagaagtacaccaaccgtggc
ctgcagttcctcgatctgatccaggaaggcaacatcggcctgatgaaggcggtggacaag
ttcgaataccgtcgcggctacaagttctcgacctacgccacttggtggattcgtcaggcg
attacccgctccatcgcggaccaggcgcgcaccatccgcattccggtgcacatgatcgag
accatcaacaagatgaatcgtatcagccgccagatcctgcaggagaccgggcatgagccg
gacccggcggaactggccgagcgcatggaaatgccggaagacaagatccgcaagatcatg
aagatttccaaggagccgatctccatggaaaccccgatcggcgacgacgacgattcgcac
ctgggcgacttcatcgaggatcagaacaacctggcaccgtccgacgcggcgatgtactcc
agcctcaaggacgccaccaaggaagtgctggaaacactgaccccgcgcgaggccaaggtg
ctgcgcatgcgcttcggcatcgacatgaacaccgaccacacgctggaagaggtgggcaag
cagttcgacgtgacgcgcgagcgtattcgtcagatcgaagccaaggcgctgcgcaagctg
cgccacccgacccgctcggagcgcctgcgcagtttcctcgacaacgagccgggcaaccag
taa
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