Pseudonocardia sp. HH130629-09: XF36_15230
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Entry
XF36_15230 CDS
T04082
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pseh
Pseudonocardia sp. HH130629-09
Pathway
pseh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pseh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XF36_15230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pseh03400
]
XF36_15230
Enzymes [BR:
pseh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XF36_15230
DNA repair and recombination proteins [BR:
pseh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XF36_15230
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALE84325
UniProt:
A0A0M3UBH7
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All DBs
Position
3329689..3330651
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AA seq
320 aa
AA seq
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MARRQVDEVRDGVELTSLDAEAFDGAGVTKRALLDHLDAVADLLLPALADRPLSVVRARP
GQAPFMQKNLPRGAPDWIPTVDVWAESSQRTVHYPLCHDRRTLLWFGNQRAVELHPTLVP
HGATTTGELVIDLDPPDGAGFDRVVAAAHPVRAALAELGLAAAVKTSGATGLHLVVPLAE
QLPIDDAFAATRAVCARAAALAPEVATTAFIRDDRGGRVFLDPTRAGGATLAAPYSPRAR
PGLPVSFPLTWDELDGASPADFTVGTVAGLLDGRPTWSELRPAPAAVPEVLLTEGRAIPV
PRVAAMHEGKRRKRARERDG
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgccggcaggtcgacgaggtccgcgacggggtggagctcaccagcctcgacgcc
gaggccttcgacggcgccggcgtcaccaagcgggccctgctcgaccacctcgacgccgtc
gccgacctgctgctgcccgcgctggccgaccggcccctgtcggtggtgcgggcccgcccc
ggccaggcgccgttcatgcagaagaacctcccgcgcggggcgccggactggatcccgacc
gtcgacgtgtgggcggagtcctcgcagcgcaccgtgcactacccgctctgccacgaccgc
cgcacgctgctgtggttcggcaaccagcgtgccgtcgagctccacccgaccctcgtgccg
cacggcgcgacgaccaccggcgagctcgtcatcgacctcgacccgcccgacggcgcgggc
ttcgaccgcgtcgtcgcggccgcgcacccggtccgggcggcgctggccgagctgggcctc
gccgccgcggtcaagaccagcggcgcgaccggcctgcacctggtggttccgctggccgag
cagctcccgatcgacgacgcgttcgccgcgacccgcgcggtgtgcgcccgcgccgcggcg
ctggcccccgaggtcgcgacgaccgcgttcatccgggacgaccgcggcggccgggtcttc
ctcgacccgacccgtgcgggcggggccaccctcgccgcgccctacagcccgcgggctcgc
cccggcctgcccgtctcgttccccctcacctgggacgagctggacggggcctctcccgcc
gacttcacggtgggcaccgtggccggtctgctcgacgggcgcccgacctggtcggagctg
cggcccgcacccgcggccgtgccggaggtgctgctcaccgagggccgggcgatcccggta
ccgcgggtcgcggccatgcacgaggggaagcgccgcaagcgcgcccgcgaacgcgacggg
tga
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