Pseudoalteromonas sp. SM9913: PSM_B0138
Help
Entry
PSM_B0138 CDS
T01374
Name
(GenBank) putative helicase (recQ-like)
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psm
Pseudoalteromonas sp. SM9913
Pathway
psm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSM_B0138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psm03019
]
PSM_B0138
03400 DNA repair and recombination proteins [BR:
psm03400
]
PSM_B0138
Enzymes [BR:
psm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSM_B0138
Messenger RNA biogenesis [BR:
psm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSM_B0138
DNA repair and recombination proteins [BR:
psm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSM_B0138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
TniB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADT70178
LinkDB
All DBs
Position
II:155617..157557
Genome browser
AA seq
646 aa
AA seq
DB search
MSTSLVQSLEQHFGFNQFRTGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPHLT
LVVSPLLALMKDQISFLNSKGIYAASLDSSQDQMQSSTVMNDVRSGKVKVLMVSVERFKN
ERFREFISQVALSMLVVDEAHCISEWGHNFRPDYLKLPRYREELNIPLVLLLTATATKKV
KRDMAERFAIEPQCIVQTGFYRANLDLNVLSVKTADKNNELTKIVRAQTGPGIVYVTLQQ
SAEQVANMLSAQGLHAVAYHAGLEDTLRGQIQDDFMAGKINVVVATIAFGMGVDKSDIRF
VIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFIYGDTPELSGIEYVIN
DIRQAQQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQYAYYADFKYKFLVDKNE
LLSQFDEQRQAFLKQIFSHTDFKKIWGTLNFDSLTQAAQVDRKRVVAALDYLAEKNLITL
ETKRITHVYKVHSEVINNPALAQQLHDYFTDKEQAEIKRIAALVRFFELQSCLSYNLARY
FDDANAPQQCGHCSVCRGHSVKLEYSIPPATIDTALIYQKVDEFLAHMATKGVHNVGIET
QCRFLAGMSVPLFARNKVRQLSGFALCEQQRYSEIKGTLLSRSMAK
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagtacctcgctagttcagtctcttgagcaacattttggttttaatcagtttagaaca
gggcaacaacaaaccatagagcagctgctaaatggccaatcatcattggcaatatttcct
acaggatcgggtaagtcgttgtgctatcaactcaccgcgttacatttaccgcatttaacg
ctggtggtatcgccgttattggccttgatgaaagatcaaattagctttttaaatagcaaa
ggcatctatgccgccagcctcgactcaagccaagaccaaatgcaaagtagcactgtaatg
aacgacgtacgaagtggtaaagttaaagtgttaatggtgtcggttgagcgctttaaaaac
gaacgctttagggagtttataagccaagtggcgctttctatgttggttgttgacgaagcg
cattgtatatctgaatgggggcataactttagacccgattacttaaaactacctcgttac
cgtgaagagctaaatattccgttagtgctactattaaccgctaccgccactaaaaaagta
aaacgcgatatggccgagcgctttgctattgagccacaatgtattgtgcaaacggggttt
tatcgcgctaatttagatttaaatgtgctgagtgttaaaacggcggataaaaacaatgag
cttactaaaattgtccgtgcgcaaaccggccccggtattgtgtatgtcacgctgcagcaa
agtgctgagcaagtggccaatatgttaagcgcgcagggcctgcacgcggtggcgtatcat
gcagggcttgaagacaccctacgcgggcaaattcaagacgattttatggcaggcaaaata
aatgtagtggttgctaccattgcctttggtatgggggttgataaatcagacatacgcttt
gtaattcactacgatttacctaaatcaatagaaaactacagccaagaaattggccgcgca
gggcgtgacggcaacccatcaaattgttataccctggctaatttagatggcttaaataca
gtagaaaactttatttacggcgatactccagagctcagcggtattgaatatgttattaac
gatattcgccaagctcaacagcaatgggaaatgcaagaatatagcctttcaagcgagagt
aatattcgccaacttgcccttaaaaccttgctggtacagcttgaaatgcaaggcgcaata
accccgcagtatgcttattatgccgattttaagtataaatttttggttgataaaaatgag
ttacttagccagtttgatgagcagcgccaagcttttttaaaacaaatatttagtcatacc
gactttaaaaaaatatggggcacacttaattttgactccctaacgcaagccgcgcaggtt
gaccgtaaacgtgtggtagccgcgcttgactatttggctgaaaaaaaccttatcaccctt
gaaaccaaacgtattactcacgtgtacaaagtgcatagcgaggtgattaataatcctgca
cttgcccagcagttacacgattattttactgataaagagcaagcggaaataaaacggatt
gctgctttagtacgcttttttgagctgcaatcttgcttaagctataacttagcccgttac
tttgatgatgcgaatgcgccacagcagtgtggacattgctcggtgtgtcgtgggcattca
gttaagcttgaatattcaattccccctgcaacgattgatacagcgcttatttatcaaaag
gtcgatgagtttttagcgcacatggcaactaaaggtgtacacaatgtaggtattgaaacc
caatgccggtttttagcgggaatgagcgtgccactgtttgcgcgtaataaagtacgtcaa
ctaagtggttttgcactgtgcgagcaacagcgctacagcgaaattaaagggacattgcta
tcaaggtcgatggctaaataa
DBGET
integrated database retrieval system
