Pelodiscus sinensis (Chinese soft-shelled turtle): 102452610
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Entry
102452610 CDS
T02980
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X2
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102452610 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pss00536
]
102452610 (COL27A1)
Glycosaminoglycan binding proteins [BR:
pss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102452610 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
102452610
NCBI-ProteinID:
XP_006137236
LinkDB
All DBs
Position
Unknown
AA seq
1888 aa
AA seq
DB search
MGGGALKMLLLLRYLALGAAPEQEPSELGSALPPGEVNLLDRLTSSAQDLSNVSLSYDDA
NCSVLAVGQYSTLSISTREAFGDRFADELSLLVKLRYSLKEETSLLTILSHRNHVLFQIR
VKPHAVVFVSTRRRHYEFPVSSLGDGDWHRVALSISSERLELHVDCQLVESVGWFNYFGL
GVSTQGLVILGGLIESFEIPFEGALQQLTFQMGDPWAAGEHCGGYHASCSSTFSPEAFHN
QSCSWGEPCPPWPESHAHSPENRLGNEGEGSAAVMGTPAPPLNGSEFTSSDLALRRNLTW
ETPRDNHSPHPNGSALTSALSTKGLSGEEDEEEESLSIQEEGFELLNSTYNKITGPGRPG
IGGSELEITENASDSVTTVTSVPPSGHRDAQVADDHFVLLGPSPKVSRPASKKDHVSKPQ
DENITTEKLKGDSGSRTWFSPSKPTDAIIDLDNPSIFSKVSAEVSQAAASAGNISRPPSS
ESRREAEAPMGGGTLESPSKTSLNPEDAVKPVHNTGAMLREKTGSEAKGSEGHDQGSALW
TAADGQQVRVKPGPRGPQGPPGLPGCPGRHGPLGPKGDKGHPGVMGRTGLPGDPGPPGVP
GVPTLVLWRNSKEDWLAFMQSSFYQLLHSGWPRQPGPRGLSGHPGKPGSPGPPGYPGEPG
DKGRLGYTGEPGLQGLLGRAGFPGSDGLPGMDGKPGPAGLPGEQGPQGFKGDQGPDGETG
DQGFLGDPGPPGEKGEKGAKGVKGQNGPSGPAGVQGMMGIKGASGFQGPPGPQGEHGAVG
SPGPAGPMGEPGHPGLVGLQGVNGSQGEMGPSGLPGPRGPKGPQGLQGRRGPPGPRGSQG
PLGADGSPGPKGDPGAAGPAGLRGERGQEGPMGSIGMPGSRGLPGERGGEGSDGVKGDLG
TKGDKGERGPQGMKGPPGVRGQMGVQGFPGPRGPAGHQGPDGEEGQIGPPGQNSSEGPKG
SRGPDGSKGRPGPRGHRGRPGQRGLVGIPGLPGLRGVPGIAGPEGKPGTQGVSGTRGSPG
RKGPAGVGGLPGSRGHDGPPGPIGPPGKQGPDGDQGSPGPQGLSGKPGLEGLQGPVGMYG
YPGLVGDRGKPGPMGGKGEPGVRGPRGFPGKDGPKGPPGPPGAKGPPGPQGRVGDPGPRG
LPGLLGPPGIRGPDGIPGKAGIPGEKGPAGPNGAAGLAGYQGQAGPAGPGGSLGEIGEKG
EVGEPGEAGIRGLDGEQGSPGLPGGEGRPGSKGEQGEAGIHGAPGVRGGSGEPGEEGPKG
RPGRPGQLGKEGDIGDPGDMGEPGPKGEKGDDGPRGPPGMPGPGAIMGETGEKGLRGEKG
QEGLLGQVGVTGLPGPAGARGPIGEAGRRGPPGLVGPEGEKGDPGPSGLIGPAGVAGLEG
VPGEAGRKGERGKPGPAGAAGSRGESGMQGPNGFGGPAGPKGDAGEKGEIGPQGSCGPPG
EAGAAGLSGVEGPLGESGKRGDPGEPGRTGPPGPRGPEGQRGRKGEKGDGGREGDRGLPG
KPGRRGKRGKAGHKLPRGPKGPKGQPGEPGSEGPRGPQGPSGIPGLKGVKGDQGPKGQKG
ERGSRGYHGPRGDDGFKGKQGTRGAPGRPGPKGEQGDVGPPGPWGSSGFPGIPGLLGQKG
PKGFQGQPGPKGAPGLPGAPGLAGPRGPSLTISMEELKHLIYSTNKLDYSTVWALLDNLG
HELRSLVDPPNGTKDHPAATCKELLLAQPDLPDGYYYVDPNQGSPQDSLLAFCNFTAGGE
TCIAPVRNQVPIKAWLRAYAAEGTFEWFSTLPGGFLLEYQGTGTVQLRFLKLHSSLATQK
VSYSCRPEADGGELQLEKAIKFLADSRAQSYMTTLQGCMLDNESSISDTIFRFDTEELAL
LPLRDLAVFHNGDASHQFGFTIGPVCFS
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcggggcgctgaagatgctgctgctgctgcgctacctggcgctgggcgccgcg
ccggagcaggagccctccgagctgggctccgcactgcccccaggtgaagtgaacttgctg
gacaggctgacttcttccgcccaggacctcagcaacgtttctctcagttacgacgacgcc
aactgcagcgtcttggcagtcgggcagtactccaccctgagcatctccacccgggaggcc
ttcggcgacaggtttgcagatgagctgagcctgttggtgaaactcaggtactctctgaag
gaggagaccagcctcttgaccatcctgagtcaccgtaaccatgtgctgttccagatcagg
gtgaagccccacgccgtggtctttgtcagcactcggcggcgacattatgagttcccagtt
tccagcctaggagacggggactggcatcgggttgccctcagcatctcctccgagagactg
gagctgcatgtggactgtcagctggtggagagcgtgggctggttcaattacttcgggctg
ggagtcagcacccaggggctggtcatcctcggaggcctgattgagtcctttgagattccc
tttgagggtgctctgcagcagctgaccttccagatgggagacccgtgggctgccggcgaa
cactgtgggggctaccacgccagctgcagcagcacgttcagcccggaagctttccacaac
cagtcgtgctcctggggggaaccgtgccccccttggccggagagccacgcccattccccc
gagaatcgcctgggcaacgagggagagggctctgctgctgtcatggggacgccggcgcct
ccgttaaacggctcagaatttacctcttcggatttggccctgaggagaaacctgacctgg
gagactccccgagacaaccatagtcctcatcccaatggaagtgccctcacttcagctctg
tctaccaaagggctctctggtgaggaggacgaggaggaggaaagcctttctattcaagag
gaaggctttgagcttttgaactctacctacaataaaattacaggacctggcaggcccggg
attggcggaagtgagttggagatcacagaaaatgccagtgattccgttaccacggttacc
tcagttcctccctctgggcatcgagacgctcaggtggctgatgatcactttgtccttttg
ggaccctcccctaaagtcagcagaccggcttccaagaaagaccacgtttcgaaaccccag
gacgagaacatcaccacagaaaagctgaagggagactcaggctctcggacctggttctca
cccagcaaaccaaccgatgccatcatagacctagacaatccttccatcttctccaaagtg
tctgcagaggtcagtcaggcagcggcctctgcaggaaacatatccaggcccccctcttct
gaatcccgtagggaggcggaggcacctatgggtggaggaaccctagagagcccttctaaa
acttccctaaaccccgaggatgctgtgaaaccagtgcataacacaggggccatgcttcgg
gagaagacaggcagtgaagcaaagggaagtgagggccatgaccagggaagtgccttatgg
acagcagcagatggacaacaggttcgagtgaagccaggaccccgtgggcctcaaggacca
ccaggtttgcctggatgcccggggagacatggacctctggggcccaaaggagacaaagga
caccctggcgtaatggggagaacaggcctccccggagatccaggccccccaggagtccct
ggtgtacctacccttgttctctggaggaattccaaggaggactggctggcattcatgcaa
tcctcgttttaccagcttctccattcaggctggccgagacagccaggaccacgtggactg
tcagggcatccaggaaaaccaggatcacctggcccgcccggatatccaggggagccagga
gataaaggccggctgggatatacgggggagcctggacttcagggcttgctaggacgtgct
ggtttccctggctcagatgggcttcctggaatggatggaaagcctggaccagctgggtta
ccaggagagcagggcccccagggatttaagggcgaccaaggtccagatggagagacagga
gaccaggggttcttgggcgaccctggaccacctggggaaaaaggagaaaagggggcaaag
ggggtgaaaggacaaaacggcccctcgggacctgctggagttcaggggatgatgggtatc
aagggtgcttcagggttccagggcccgcctgggccgcagggggaacatggcgcagtgggc
tctccagggccagccggacctatgggcgagccggggcatccggggctggtcggcttgcaa
ggagtcaatggctctcagggagaaatgggcccttccggcttgccaggcccccggggcccc
aagggaccacaaggcttgcaagggagacgtgggcccccggggccgagaggatcacagggt
ccgctcggggctgatggatcccctgggcctaaaggagaccctggagcagccggccctgcc
ggcctcagaggcgagcgtggtcaagaaggccccatggggtcgattggaatgccaggttca
aggggactcccaggagagcggggtggcgaaggctcagatggagtgaagggggacctggga
accaaaggagacaagggagaacgtgggccgcagggaatgaaagggcccccaggagttcga
ggtcaaatgggtgtgcaggggtttcctggacccagagggccggctggacaccaaggacct
gatggggaggaaggacagatcggcccacccggtcagaacagcagtgaagggccaaagggc
agccgaggaccagatggctcgaagggaaggccagggccgagaggacacaggggccgccca
ggccagcgcgggttggttggaatcccaggactcccaggcttacgaggcgttcctggaata
gcaggcccagaaggaaagcctggtacacagggtgtatcgggtacccgggggagccctggc
agaaagggaccagctggtgttggtggcttacccggtagcagagggcacgatggacctcct
ggaccaataggccctccaggaaaacaaggaccagatggagaccaagggtcaccagggcca
cagggactgtctggtaaacctggcttggaaggactgcaaggacctgttgggatgtatggc
tacccaggactggttggggaccgaggaaagccaggacccatgggtggaaagggagagccc
ggagtccgaggcccacgaggatttccaggcaaagacggtcccaaaggtcccccaggccca
cctggtgcgaaaggcccccccggcccacagggcagagtgggagacccaggtcctagaggg
cttccgggactgctggggcctccaggcattcgggggccagatggcatccctgggaaggct
ggtattccaggagaaaaggggccagcggggccgaatggggctgctggactggctggatac
caaggccaggcagggccagctgggcctggagggtctttgggggagataggagagaagggt
gaagtgggggagcctggagaagctggcatcagaggcctggatggagagcagggttcccca
ggactccctggcggggaaggtcggcctgggtccaaaggcgagcagggggaggcaggaatc
catggggctccaggtgtccgtggaggctctggcgagccaggagaggaagggccgaaggga
cgtcctgggagaccagggcagctaggaaaagagggtgacatcggggatcccggagatatg
ggagagccagggcccaagggcgaaaagggcgacgatggccctaggggccctcctggaatg
cctggaccaggtgccattatgggagaaactggtgaaaagggacttagaggcgagaagggg
caagaaggtttactgggtcaggtcggtgtgaccgggcttccgggacctgctggagccaga
ggaccaattggtgaagctggcaggcgagggccacccgggttagtcggccctgagggcgag
aagggggatccaggccccagtggactgattggcccagctggtgtggctggattggaggga
gtccccggggaagctggaagaaaaggcgagcgagggaagccagggcctgccggtgcagca
ggctccaggggggaaagcgggatgcaaggccccaacggctttggcgggcctgcaggaccc
aaaggagatgcaggggaaaaaggagagattggccctcagggttcttgtgggcctcctgga
gaagccggcgcagcagggctaagtggcgttgagggccctctgggcgagagtgggaagcgg
ggggacccgggagaaccaggacgaacggggcctccaggaccacggggtccagagggacag
aggggtcgtaaaggagaaaagggggatggcgggcgtgaaggagatcggggcctccctggc
aaacctggcagacggggcaagcgaggcaaagccgggcacaagctcccgagaggccccaag
ggacccaagggccagcccggtgaaccaggctcagagggaccacgcggcccacaaggacct
tccgggattcctggcctgaaaggggtgaagggagaccagggcccaaaagggcagaagggt
gagaggggcagcagaggctatcacggccctcgaggagacgatggcttcaagggcaagcag
gggaccagaggtgctcctggaaggccaggaccaaagggagagcagggtgatgtcggccca
cccggtccatggggatcttccggcttccctggaatcccgggcctgcttggacaaaaggga
ccgaaaggcttccagggccagccgggacccaaaggcgcgccaggcctgccgggtgcaccc
ggccttgccggtcccaggggaccttcactaaccatctccatggaggagctgaagcatctg
atttattccacaaacaagctggactacagcacggtgtgggctcttctggacaacttgggc
catgagctgaggagcctggtagaccccccaaatggcaccaaagaccacccagccgccacc
tgcaaggagctcctcctggctcagcctgacctgcctgatggttactattacgtagacccc
aatcaaggcagcccgcaggactctctgctggcgttctgcaacttcaccgcagggggagag
acctgcatcgcgccagtacgcaatcaggtgcctatcaaagcctggctgagagcatacgcg
gccgaggggacctttgagtggttcagcaccctgcccgggggcttcctgctggaataccaa
ggcaccggcaccgtccagctccggttcctgaagctgcacagcagcctggccacccagaag
gtgtcatactcctgcaggcctgaggccgacggaggggagctgcagctggagaaagccatc
aaattcctcgcagactccagggcgcagagctacatgaccaccctgcagggctgcatgctg
gataacgagtcgtcaatctctgacaccatattccggtttgacaccgaggagctggcgctc
ctgcccctgcgcgacctggctgtgtttcacaacggagacgcctctcaccaatttggattc
actattggacccgtttgcttcagctga
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integrated database retrieval system
