Pseudomonas syringae pv. tomato DC3000: PSPTO_1646
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Entry
PSPTO_1646 CDS
T00118
Name
(GenBank) LysM domain protein
Organism
pst
Pseudomonas syringae pv. tomato DC3000
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_14
LysM
PhoU
ATG16
TPR_8
TPR_21
TPR_6
FAM76
Spc24
TPR_4
DUF641
Cytochrom_B562
DotU
Motif
Other DBs
NCBI-ProteinID:
AAO55166
UniProt:
Q886D3
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Position
1803599..1805752
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AA seq
717 aa
AA seq
DB search
MARELFCKGAIAAALLSCSTMASALGLGEMKLHSALNQPLNAEIELLETGGLSNEDVIAR
LASPEAFAKAGIERVFFLNDLRFTPVLRGNSGVIRVVSNKPVTEPYLSFLVQLARPNGDL
LHEYTVLLDPATSPQGLAATRSRNQQRSLNAAQESRMPVAPPAALQGKHYTVASGDTLNG
IASRLQGPGGKVSASQMAEAIRALNPQVFAAGAGSALKVGQDLLLPDSAVMPAAATAPAA
SAVVAPPAELQRTAEQLSAAAIENQQLAQSLEALKTQTQELQEQMIGKDKQITALRSDLA
LAQSAARPAAPATPPAAPAQPAVTVASSSEPLVSLPILLAILALVLLLLVYAYSKRRQRR
HATAPVVAQDDPLIKPAQAAMLPVFEVPAVAPQPAAQASPSTLVKAATPQRPAGAVPDAL
DGVSIYIAYGRFSEAMGILRSALETQPERGDIRIRLLELLAEQGDGSGFVREERSALEHG
VDPQTIQDIRDRFPQLKAAEAAPAAFLPAAAVVAASTLSFDKAEPEPAAYLQPDLEPEPP
AQLDETAAASLNPQQTDEFQLNLDDLSMDADWDLVDPFDTPPPRSKPETVTAPAPAEVDP
GFSSDLTRLPEVFELSDEQFLSDFSEPDGIEPIEPIEVVAPAAADDLSDEFLDSFMNDDG
DFDLLDLEEPPLSQINQAQVLIEEGDLESAREILQQVIDESDEEHRRMARELLAGIS
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgagttgttttgcaagggcgccattgcggcagcgttgctgagctgttcaacg
atggcgtccgcgctggggctgggcgaaatgaagctgcactcggcgctcaaccagccgctg
aatgctgaaatcgagttgctggagaccggcggtctcagcaatgaggacgttattgccagg
ctcgcatcgcccgaagccttcgccaaggcaggcatcgaacgggtgttcttcctcaatgac
cttcgtttcacccccgtgctgcgcggtaacagtggcgtgatcagggtggtttccaacaag
ccggtcaccgaaccttacctgagtttcctcgtccagttggcgcgcccgaacggcgatctg
ctgcatgaatacaccgtgctgctcgaccctgccacgtcaccgcaagggctcgctgccacg
cgcagccgcaatcagcagcgttcgctgaatgctgcgcaggaatcgcgcatgccggtcgcg
ccaccggcagcgctgcaaggcaaacattacacggtcgccagtggcgacacgctgaatggc
atcgccagccgcctgcaagggccgggcgggaaagtatcggccagccagatggccgaagcc
attcgcgcgctcaacccgcaggtatttgctgcaggggcaggttccgcgcttaaagtcggt
caggacctgttactgcctgattccgccgtaatgcccgccgctgccacagcccccgctgca
agcgcagttgtagcgccgcctgccgagttgcagcgcaccgccgagcagctgtcggcggct
gctatcgaaaaccagcagttggcgcagtctctggaagcgctcaagacccagacccaggaa
ctgcaagagcagatgattggcaaggacaagcagatcactgcgttgcgcagcgaccttgcc
ctggcgcagtccgcggcccgacctgccgcacccgccacgccgcccgcggccccggctcag
ccggcggtgaccgttgcatcgagcagcgagcctctcgtgagcttgccaatactgctcgcg
atactggcgctggtgcttctgttgctggtgtatgcctactcgaaacgccgtcagcgtcgt
catgccacggcccctgtcgttgcgcaggatgacccgctgatcaagcctgcccaggccgcc
atgctccctgtgttcgaggtgcccgccgttgcgccgcagcctgccgcccaggcatcgcca
tcgacgctggtcaaggctgcgacgccgcaacgtccggctggcgctgtgcccgatgcgctg
gacggtgtcagcatttacattgcctacgggcgattcagcgaggcaatgggcattctgcgc
agcgccctggaaacccagccggagcgcggcgacattcgcatcaggttgctggagttactg
gccgagcagggcgatggcagcggctttgttcgcgaagagcgctcagcgcttgagcacggc
gtcgatccgcagaccattcaggacattcgcgatcgctttccacaactcaaagcggcggag
gcggcccctgctgcgttcctccccgctgctgcggtcgtagcagcgtccacgctgtctttc
gacaaagccgaaccagagccagctgcctacctgcaaccggacctggagcctgagcccccg
gcgcaactggacgaaacagccgccgcgtccctcaacccgcagcaaaccgatgaattccag
ctgaacctggatgacctgtcgatggacgccgactgggatctggtcgatccgtttgacacg
ccgccgccgcgcagcaagccagagaccgtgacagcgcctgcgcccgctgaagtcgacccc
ggcttttcttcggacctgactcgattgccggaagtcttcgagctgtcggatgagcaattt
ctcagtgatttctccgagccggatggcattgagccgatcgagccaatcgaagtggttgca
cccgccgctgccgacgatctgagcgacgagtttctcgacagcttcatgaacgatgacggg
gatttcgacctgctggatcttgaagagccgccgctcagccagatcaatcaggctcaggta
ctgatcgaggagggcgacttggagtcggctcgtgaaatcctgcaacaggtgattgacgag
tccgacgaagagcatcggcgcatggcgcgcgagctgttggcgggcatcagctga
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