Pseudomonas syringae pv. tomato DC3000: PSPTO_2680
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Entry
PSPTO_2680 CDS
T00118
Symbol
gabD-3
Name
(GenBank) succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst00250
Alanine, aspartate and glutamate metabolism
pst00310
Lysine degradation
pst00350
Tyrosine metabolism
pst00650
Butanoate metabolism
pst00760
Nicotinate and nicotinamide metabolism
pst01100
Metabolic pathways
pst01120
Microbial metabolism in diverse environments
Module
pst_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
PSPTO_2680 (gabD-3)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
PSPTO_2680 (gabD-3)
00310 Lysine degradation
PSPTO_2680 (gabD-3)
00350 Tyrosine metabolism
PSPTO_2680 (gabD-3)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
PSPTO_2680 (gabD-3)
Enzymes [BR:
pst01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
PSPTO_2680 (gabD-3)
1.2.1.20 glutarate-semialdehyde dehydrogenase
PSPTO_2680 (gabD-3)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
PSPTO_2680 (gabD-3)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AAO56182
UniProt:
Q882E8
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Position
2975356..2976786
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AA seq
476 aa
AA seq
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MYPDVQLYIDGQWRASRDGRSIPVIDPATGQSLGSVAHAGIADLDEALSAAERGFATWRA
TSAYDRYKLMQKAADLVRERADSIARIMTQEQGKPLAEARMETLSAADVIDWLAEEGRRS
YGRIVPSRGVSIEQKVIKEPVGPVAAFTPWNFPINQVVRKLSSALAAGCSIIVKAPEETP
GSPAELIRAFADAGVPAGVIGLVYGDPAEISGYLIPHPVIRKVTFTGSTPVGKQLAALAG
KHMKRATMELGGHAPALVFDDADIDLAARVLATAKFRNAGQVCVSPTRILVQRKVLQAFT
EKFVGLTREIKVGNGLESGTTMGPVANDRRIPALVDLIEDAVSAGATVSAGGKAVEGQGY
FFEPTVLSGLTPAMRIMNEEPFGPVALLVPFDTVEEAIVESNRVPFGLASYAFTTSMKTA
QALSTYIEAGMLSINHQGIGLPEVPFGGIKDSGYGSEGGTEAIEAYLNTKLVTQYS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtatccagacgtacagctttatatcgatggccaatggcgcgcgagccgcgatggtcgc
tccattcctgttatagaccctgctaccggccagtcgctgggcagcgtggcgcatgccggt
atcgccgatcttgatgaagcactctcagcagcggagcgtggctttgccacctggcgcgcg
acctcggcgtatgaccgttacaagctgatgcagaaagccgccgatctggttcgtgagcgg
gcggacagcatcgccagaatcatgactcaggaacaaggcaagccgctggctgaggcgcgc
atggaaaccctgtcggctgctgacgtcatcgactggctggctgaagagggccgtcgcagc
tatggccgtatcgtgccgtcgcgtggcgtgtccatcgagcagaaggttatcaaggagccc
gtcggcccggttgctgcgttcacaccgtggaacttcccgatcaatcaggtggtgcgcaag
ctgtcttcggcgctggcagccggttgctcgatcatcgtcaaagccccggaagaaactccg
gggtcacctgccgagctgattcgggcgtttgccgatgcgggcgttccggcaggcgtcatt
ggtttggtgtatggcgatccggcggaaatttccggctacctgattccgcacccggttatt
cgcaaagtgacttttaccggctctacgccggtcggcaaacaactcgcggcattggccggc
aagcacatgaagcgcgccaccatggagctgggcgggcatgcgccagcactggtgttcgac
gacgccgacattgacctggcggctcgcgtgctggccaccgccaagttccgcaacgccggg
caggtctgcgtatcgccgacgcgtattctggtgcagcgcaaggtgttgcaggcgtttacc
gagaaattcgtcggcctgacccgtgagatcaaagtgggcaacggtctggagtcgggtacg
accatgggcccggtggccaatgatcgacgtatcccggcgctggttgatctgattgaagac
gcagtcagtgctggcgcgaccgtttctgcaggtggcaaggctgtcgagggacagggctac
ttcttcgagccgaccgtactcagtggcctgacgccagccatgcgcatcatgaacgaagaa
ccgttcgggccggttgcgctactggtgccgttcgacaccgtggaagaagccattgtcgag
tccaaccgggtgccgttcgggctggcgtcctacgccttcacgacctcgatgaagaccgct
caggcgctgagcacctacatcgaagcgggcatgctgtcgatcaaccaccagggcatcggc
ttgccggaagtgccgttcggcgggatcaaggattccggctacggttccgaaggcggcacc
gaggccatcgaggcctacctgaacaccaaactggtcactcaatacagctga
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