KEGG   Pseudomonas syringae pv. tomato DC3000: PSPTO_5425
Entry
PSPTO_5425        CDS       T00118                                 
Name
(GenBank) clpB protein, putative
  KO
K11907  type VI secretion system protein VasG
Organism
pst  Pseudomonas syringae pv. tomato DC3000
Pathway
pst02025  Biofilm formation - Pseudomonas aeruginosa
pst03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:pst00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    PSPTO_5425
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02025 Biofilm formation - Pseudomonas aeruginosa
    PSPTO_5425
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pst02044]
    PSPTO_5425
Secretion system [BR:pst02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   PSPTO_5425
SSDB
Motif
Pfam: AAA_2 AAA_lid_9 AAA AAA_5 ClpB_D2-small AAA_22 AAA_16 NACHT AAA_7 nSTAND3 Clp_N TniB Sigma54_activat AAA_30 AAA_25 AAA_24 Hpr_kinase_C SLFN-g3_helicase
Other DBs
NCBI-ProteinID: AAO58847
UniProt: Q87U82
LinkDB
Position
complement(6166575..6169223)
AA seq 882 aa
MSNVDLQQLIQALDAETRRDLESSAERCVARGGSKILVEDLLLELLERPQGLLARALQDA
EVDAGELSASLQSRVEHSASRNPVFAPELVQWLQDALLVANLELGQTQVEQAALILALLR
NPMRYAGSRYQPLLAKLNIDRLKEFALSKQEQPANGKSAAQGESLLERFTHNLTQQARDG
KLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQALKGV
ELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSDA
ANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQ
VYEKSHGIYLRDDAVVAAAELSARYLAGRQLPDKAVDVLDTACARVRISLAAAPESLERL
RGELAEGGRQRQALRRDAEAGLLIDHESLEALETRLHAAEEERVALEAMWLEQKTLAERL
LELRQQLAKAREAVAAVPVVEIGEDDEGTVIEAVALDETQSVEALTAALNDTHVALAALQ
VKERLVSFEVCPRLVAEVISAWTGVPLAQLAREHNAKVASFAKDLRIRIRGQEQAVHALD
RSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALADLLYGGDRFITTINMSEFQEKH
TVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGVAND
GEGREIDFRNTLILMTSNLGSDQISALCEDGARPTAEVLEETIRPVLSKHFKPALLARMR
VVPYYPVSGPVLRELIEIKLGRLGERLNRRQLEFTYCQDLVDHLAQRCTQSDSGARLIDH
LLDLHVLPLVADRLLDAMATGESLKRVHATLDTSGTVTCEFA
NT seq 2649 nt   +upstreamnt  +downstreamnt
atgagcaatgtagacctgcaacaacttattcaagcgctggacgccgaaacccgtcgtgat
ctggaaagctccgcggagcgctgcgtagcccggggcggtagcaagattctggttgaagat
ctgttgctggagctgctggagcgtccgcaaggtctgctcgcgcgtgccctgcaggatgct
gaagtggacgctggtgaattgagtgcctctctgcaatcgcgggtcgagcacagcgcttca
cgcaacccggtgtttgctccggaactggtgcaatggctgcaggatgccttgctggtggcc
aaccttgaactgggtcagacccaggtcgaacaggccgcgctgatcctcgcactactgcgc
aacccgatgcgctacgccggtagccgctatcagcctttgctggccaaactgaatattgat
cggctgaaagagtttgctctgtccaagcaagagcagcctgccaacggcaaatcggctgct
cagggcgaatcgctgttggagcgtttcactcacaacctgacccagcaggcccgcgacggc
aagcttgatccggtactgtgccgcgatggcgcgattcggcaaatggtcgacatcctggct
cggcgccgcaagaacaatccgattgtggtcggcgaagccggtgtcggtaaaaccgccatc
gttgaaggtctcgcatcccgaattgctgcgggtgaagtgccgcaggcgctcaagggcgtc
gagctgctgtcgctggacatggggctgctgcaggctggcgccagcgtaaagggtgagttc
gagcgtcgcctcaaaggtgtgatcgacgaagtcaaagcgtcgcctaagccgatcattctg
ttcatcgatgaagcccacacgcttatcggtgctggcggcaacgctggtggttccgatgcc
gccaacctgctcaagccggctctggcgcgtggcgagttgcgcaccatcgctgccacgacg
tgggctgagtacaagaagtactttgaaaaagacccggctctggcgcgtcgcttccagcct
gttcaactgcatgaaccgaccgtaagcgaagccgtgaccatcctgcgtggtctggcacaa
gtctatgagaagagccatggcatttacttgcgcgacgacgctgtggttgctgccgccgag
ctgtctgcccgctatctggctggccgccagcttcctgacaaagcagtcgatgttctcgat
acggcgtgcgcgcgcgtgcgtatcagcctggctgccgcgccggagagtctggagcgcctg
cgtggcgagctggctgaaggtggtcgccagcgtcaggcattgcgtcgcgacgctgaagcc
ggtctgctgattgaccacgagtcgctggaagctctggaaacgcgtctgcacgcagctgaa
gaggaaagggttgcactggaagcaatgtggctcgaacagaaaacattggccgaacgcttg
ctggaactgcgtcagcaactggccaaggcgcgtgaagcggtagctgccgtgccagtcgtt
gaaatcggagaggacgacgagggcacggtcatcgaagccgttgcgctggatgaaacgcag
agcgtagaggcgctgacagcagccctgaacgatacccatgtcgccctggccgcactgcag
gtcaaggagcgactggtgagcttcgaggtctgtccgcgtcttgtggctgaggtgatcagc
gcctggaccggtgtcccgctggcgcaactggctcgtgagcacaacgccaaggttgccagt
ttcgccaaggaccttcgtattcgcatccgtggtcaagagcaggccgttcatgcccttgat
cgctccatgcgcgctactgccgctggcttgaacaaacccgatgcgccggtaggcgtgttt
ctgcttgtggggccgagcggcgttggcaagactgaaacggcgctggcgctcgctgatctg
ttgtacggaggtgatcgttttatcaccaccatcaacatgtccgagtttcaggagaagcat
acggtttcgcgcctgatcggtgcgccgccaggttacgtcggttatggcgaaggcggcatg
ctcaccgaagctgtacgtcagaagccgtattcggtcgtgctgcttgatgaagtcgagaaa
gccgaccctgatgtgctcaacctgttctatcagatcttcgacaaaggtgtggccaacgac
ggcgagggacgcgagatcgacttccgcaatacgctgattctgatgacatcgaaccttggc
agcgaccagatcagcgcactgtgcgaagacggcgcgcggccaaccgccgaagtgcttgag
gagaccatccggccggtcctcagcaaacacttcaagccagcgttactggcacgtatgcgc
gtagtgccgtactacccggtcagcgggccggtgctacgcgagctgatcgaaatcaaactc
ggtcgcctgggcgagcgcctgaaccgtcgtcagctggaattcacttactgtcaggacctc
gttgatcacttggcgcagcgttgcactcaaagcgacagcggtgcgcgtctgatcgaccat
ctgctggaccttcatgtcctgccgctggtagctgaccgcctgctcgatgctatggctacc
ggagaaagtctgaagcgtgttcatgccacgctggacacttccggcaccgtgacgtgtgag
tttgcctga

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