Pseudomonas sp. VLB120: PVLB_07890
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Entry
PVLB_07890 CDS
T02897
Symbol
fadB
Name
(GenBank) multifunctional fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv00071
Fatty acid degradation
psv00280
Valine, leucine and isoleucine degradation
psv00310
Lysine degradation
psv00362
Benzoate degradation
psv00380
Tryptophan metabolism
psv00410
beta-Alanine metabolism
psv00640
Propanoate metabolism
psv00650
Butanoate metabolism
psv00907
Pinene, camphor and geraniol degradation
psv00930
Caprolactam degradation
psv01100
Metabolic pathways
psv01110
Biosynthesis of secondary metabolites
psv01120
Microbial metabolism in diverse environments
psv01200
Carbon metabolism
psv01212
Fatty acid metabolism
Module
psv_M00087
beta-Oxidation
psv_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
PVLB_07890 (fadB)
00650 Butanoate metabolism
PVLB_07890 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
PVLB_07890 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
PVLB_07890 (fadB)
00310 Lysine degradation
PVLB_07890 (fadB)
00380 Tryptophan metabolism
PVLB_07890 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
PVLB_07890 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
PVLB_07890 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
PVLB_07890 (fadB)
00930 Caprolactam degradation
PVLB_07890 (fadB)
Enzymes [BR:
psv01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
PVLB_07890 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
PVLB_07890 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
PVLB_07890 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
PVLB_07890 (fadB)
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
SDH_sah
Motif
Other DBs
NCBI-ProteinID:
AGZ34378
UniProt:
A0AA86AD38
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All DBs
Position
1785994..1788141
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AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLDELRQAVDAIKADASVKGVIVSS
GKDVFIVGADITEFVENFKLPEAELVAGNLEANRIFNAFEDLEVPTVAAINGIALGGGLE
MCLAADYRIMSSSAKIGLPEVKLGIYPGFGGTVRLPRLIGSDNAIEWIASGKENRADDAL
KVGAVDAVVAPELLQAGALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLARTSVAESLVGLFLNDQEL
KRKAKAHDEIAHDVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIREEAIQLGLNEASKL
LGKRVEKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVESQVK
EDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDVAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAVDALYEANRLGQKNGKGFYAYETDKRGKP
KKVADSSVLDVLKPIVFEAREVSDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGPLYHPTAKLREMAKNGQRFFN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagcggcatcgtcgaactg
aagttcgacctcaagggtgagtccgtcaacaagttcaatcgcctgaccctggacgagctg
cgccaggccgtcgacgccatcaaggccgacgcctcggtgaaaggcgtgatcgtcagcagt
ggcaaggacgtgttcatcgtcggcgccgacatcaccgaattcgtcgagaacttcaagctg
cccgaggccgaactggttgccggcaacctggaagccaaccgcatcttcaatgccttcgaa
gacctcgaagtaccgacggtcgcggccatcaacggcatcgccctgggtggcggcctggaa
atgtgcctggcggccgattaccgcatcatgtcctccagcgccaagatcggtctgccagag
gtcaagctgggtatctatcctggcttcggtggtaccgtgcgcctgccgcgcctgatcggc
tccgacaacgccatcgagtggattgcctcgggcaaggaaaaccgtgccgatgacgcgctg
aaagtcggtgcggtcgatgccgtggtcgcccctgaactgctgcaggccggggccctggac
ctgatcaagcgcgccatcagcggcgagctggactacaaggccaagcgccaaccgaagctc
gagaagctcaagctcaatgccatcgagcagatgatggccttcgaaaccgccaaaggcttc
gtggccgggcaggccggcccgaactatccggctccggtcgaagccatcaagaccatccag
aaagccgccaacttcggccgcgacaaagcgctggaagtcgaggccgcaggtttcgccaag
ctggcccgtacctcggtcgccgaaagcctggtcggcctgttcttgaacgatcaggagctc
aagcgcaaggccaaggcccatgatgaaatcgcccacgacgtgaagcaggctgccgtgctc
ggcgccggcatcatggggggtggtatcgcttatcagtcggcggtcaaaggtaccccgatc
ctgatgaaggatattcgcgaggaagccatccagctgggcctgaacgaggcttccaagctg
ctcggcaagcgtgtcgagaaaggccgcctgaccccggcgaaaatggcggaggcgctcaac
gccattcgtccgacgctgtcctacggcgacttcgccaacgtcgacatcgtggtcgaagcc
gttgtcgagaacccgaaggtcaagcaggctgtattggccgaagtcgaaagccaggtgaag
gaagatgcgatcctcgcctccaacacctcgaccatctccatcaacttgttggccaaggcc
ctcaagcgtccagagaacttcgtcggcatgcactttttcaacccggtgcacatgatgccg
ctggtggaagtgattcgtggcgagaaatccagcgatgtagcggtcgccaccaccgtggcg
tacgccaagaagatgggcaagaacccgatcgtggtcaacgactgccccggcttcctggtc
aatcgcgtgctgttcccgtatttcggcggcttcgccaagctggtcagcgccggtgtcgac
ttcgtgcgcatcgacaaggtcatggagaagttcggctggcccatggggccggcgtacctg
atggacgtcgtcggcatcgacaccggccaccacggccgtgacgtaatggccgaaggcttc
ccggaccgcatgaaagatgaccgtcgctcggccgtcgatgcgctctacgaggccaaccgt
ctcggccagaagaacggcaagggcttctacgcctacgaaaccgacaagcgcggcaaaccg
aagaaagtggccgacagcagcgtgctcgacgtcctcaagccgatcgtgttcgaagcgcgt
gaagtcagcgacgaagacatcatcaactggatgatgatcccgctgtgcctcgaaaccgtg
cgctgcctggaagatggcatcgtcgaaaccgccgccgaagccgacatgggcctggtctat
ggcattggcttccctcccttccgtggtggtgcgctgcgttacatcgattcgatcggggtg
gccgagttcgttgccctggctgaccaatatgccgacctcggaccgctgtaccacccgacc
gcgaagctgcgcgagatggccaagaatggccagcgcttcttcaactga
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