Providencia stuartii ATCC 33672: DR96_406
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Entry
DR96_406 CDS
T03282
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psx
Providencia stuartii ATCC 33672
Pathway
psx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DR96_406 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psx03021
]
DR96_406 (rpoD)
Transcription machinery [BR:
psx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DR96_406 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Eclosion
Chalcone
TMPIT
Cwf_Cwc_15
Motif
Other DBs
NCBI-ProteinID:
AIN64291
LinkDB
All DBs
Position
454808..456661
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AA seq
617 aa
AA seq
DB search
MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLILAETTSDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDHVEAGESRLSDLITGFVDPNAEEDLAPTA
THVGSELPQEELDKDDDEDEDDEDGDDSDSDDDNSIDPELAREKFSELRAQYEKTRQHIK
QFGRNNAQTAQAIEELSEVFKQFRLVPKQFDYLVNNMREMMDRVRLQERTIMKLCVEQCK
MPKKNFITLFSGNETSETWLTAAKAMNKPWCEKLVEVEEEILRCLQRLRQIEEETGLTIE
QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPLDSAT
SESLRSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEVLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcgcagcttaagctactcgtaaccaagggtaaagagcaaggt
tacttaacctatgctgaggtcaacgaccatctgccggaagatatcgtcgattcagatcag
attgaagatatcatccagatgattaatgacatgggcatccaggtcatggaagaagcacct
gacgccgatgatttgatactggctgaaaccacatccgacacggatgaagatgcggcagaa
gctgcagcacaagttctatccagtgttgaaagtgaaattggtcgtactacagaccctgtg
cgcatgtatatgcgtgaaatgggaacagtcgaactcttaacccgtgagggtgagatcgac
atcgcaaaacgtattgaagatggcataaaccaagttcaatgctctgttgcagagtaccct
gaagccatcacttatctccttgaacagtatgatcacgtcgaggcaggcgaaagccgttta
tccgacctgatcaccggtttcgtcgaccctaacgctgaggaagatctcgcaccaactgca
acacacgttggctctgaacttccacaagaagagttagataaagacgacgatgaagacgaa
gatgatgaagacggcgatgacagcgatagcgatgatgataacagcatcgatcctgaacta
gcccgtgaaaaattcagcgaattgcgcgcgcaatacgaaaaaacacgtcagcacattaag
caatttggtcgtaacaatgcacaaaccgcacaagcgattgaagagctttctgaagtcttc
aaacagttccgcttagtgccaaaacaatttgactatctggtcaataacatgcgtgaaatg
atggatcgcgttcgccttcaagagcgtaccatcatgaaactgtgtgttgaacagtgcaaa
atgcctaagaaaaacttcatcacgctatttagcggtaatgaaaccagtgaaacttggcta
acagccgccaaagcgatgaacaagccttggtgtgaaaagctggttgaagttgaagaagag
attttgcgttgtctgcaaagattacgtcaaattgaagaagaaacaggcctgactattgag
caggtgaaagatatcaaccgtcgcatgtctattggtgaagccaaagctcgccgtgcgaaa
aaagagatggttgaagcgaacttgcgtctggttatttcgatcgcgaaaaaatataccaac
cgtggtttgcagttccttgacttgatccaagaagggaatatcggtctgatgaaagcggtt
gataagtttgaatatcgccgtggttataaattctcgacctatgcaacttggtggatccgt
caggcaattacgcgttctatcgcggatcaggctcgtaccatccgtattcctgttcacatg
attgaaaccatcaataaattgaaccgtatctctcgtcagatgctacaggaaatgggccgt
gaaccttcaccagaagagttagcggaacgcatgatgatgccggaagataagatccgtaag
gtactgaaaatagctaaagagcctatctctatggagacgccaattggtgatgatgaagat
tcacatctcggcgatttcattgaagataatactttagaactgccattagactcagcaact
tcagaaagtctacgttcggcaactcatgaagtattagctggcttgactgcacgtgaagca
aaagtactgcgtatgcgttttggtatcgatatgaacactgaccacacgctagaagaagtg
ggtaaacagttcgatgttacccgtgagcgtatccgtcagatcgaagcaaaagcactgcgt
aaattgcgtcatccaagccgctcagaagttctacgtagcttccttgacgaataa
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