Pseudomonas syringae CC1557: N018_23460
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Entry
N018_23460 CDS
T03014
Name
(GenBank) type III effector
Organism
psyr
Pseudomonas syringae CC1557
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF6543
DUF6723
Motif
Other DBs
NCBI-ProteinID:
AHG43023
UniProt:
W0N173
LinkDB
All DBs
Position
5205897..5212010
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AA seq
2037 aa
AA seq
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MTHTLPPVLITPVPLAPADTWPAASAALGRLDELRTLLADELQALPRPGETLLTAIGGVE
SAERELEIFSLLQQIDDFWTAPGETGESRRERLEPALQRALRDEASVRIHERDLESGYLA
CLPALSEVPQDAALTYHSLSVQLHDDEQLELAGVLAISQAQDRTLLLLPGIGIMAFANQA
LMGETLARWLNTPSLQSGLLNTVERQQQERLAEIIQDADLYLEPFTAADVQLQPLNTAPF
KHALDRLLNKQRNDVRHACERADIVDQKRRQELIQEAIDMHGMFGPASMLELRELSNRQR
QYQQNMPDWMKIASEADLSIYSEHLRRYDEAHAVMLSVLGSAASPEQFAEAHLRRRLAND
LGHDLAPHALTIDTLRTLPSTSETYRVSRSLVQLALYGLHPNDAVAGSDFLDNTVIRLND
APLPAACSTVTPAYLAGLISELELRATFGDFQRTVYQKEHNLHLLRVLARTRLSALAWAA
KMQGHIRPEDFAIVAASTTPPQNTPNPTLRVQQIRLNRHNVMARLLVFRKQDAQGQTERL
IMVALDAPGQHFKAFDTETHLLHEVVGWSASPAMSAWLLDQVDVAARPELAQQLAALSQK
PQPKEDFLQFIDHPDCEAALRSFTDEQTLVMLSEQANHTPDWYLRASREQRRELLALEEA
IGGALGNYQAYTQVQPFKDYVHQRASQQLGKLLSVPAGTLDPDLIVITSERETLTYTDML
LNGYDDSIDPVRTSADAQATFSGPEGVDLSALTPAGVAGSVRGKWLADDYIALIRNTLLN
TENAGYAERRQASVLITQLQMKAAALRSLLKGHIEAAHYTWLQQSLDNAHLNSPAAREQY
PLYPLQLHIDKPLIASGLTDIDQLVIPSHLLTHVETVQGCLVILPMQIRHAALLYTPQAP
DGIEFRLFSDFASSLNSEGMIDYYKDRCRIKARRTLSFFLRDMRQGNANKPPVIPKAFIS
DVASTCYNWPLECRLRDVEETTTGRNDMLSHLIWISVEIIATALTLPFPPASFAVGSLLS
LHESGQALVALTEGDKDRATAYIVSALFNGIGAGGDLLTGLKGFGGVLHNLEQGRESAPV
LRSLQRQSSLPRYEDLYPVELQEQAFLLGKPNANGHAAVFHATPVASAPPIATGQFAARK
ASGAWQPLLPTPATVTRAPSGVRTDLAVAISLDNLPHITDGHAKGVCLVNGKHYIELSGQ
TFEVQYDAGLRGWQIIDPANPFAFFGNQPVRLDGQGQWLIVERQRLHGGGLESPANYRPL
PEEAAGVSTDTLNDFEMPSTLRAHLDIVISKKPFDPTGSGMEAYFEFYFTEVRQTFTALR
EKLYQDAQAFFARFPLPPKLPLPTNELPGSVETLIEHVFTHSNGLVFSEAPKSVASKRLL
LLNMPLLAEQRVEVLYIEHLLTDKHLPKLAKYQALGKKSRTGSKELKYYLRETNRGALNN
SSTEYDYYHLIKAAHRYGIEVRPFSSSISYPFLGHPVLAAADDPAAATKMSNFFGHKLIS
HDIAADSSKRWVALLDQKLATTHDQIPGIADMHGVPSVHVKDLQAGRPTRIRQGAYASPP
GQSSIRCDFSIAFADPTRTAIPLPPATPLDEMLVRELGSPTSVVDGEHWAGQYGFVRAES
DAWLHVDPEDWTANSPATAIQQSLTDAIYEMPLDTRTTFHTLANFEKRGLDMEYFFDDPE
FETVRDIFALRRKRLQQDAATISVAELPPRPVLPVIAPQTSTSELLETLYTQADGIVIGE
SHFSVASKKLIIDNLPLLSEQNVRTLYMEHLLTDIHQADLDRFFETGQMSKTLLHDLKTL
DQGHYTDPNKVYTFEQLVIKARQQGIEVRAIDCASSYHLKGIAREEAITRQQMMNYFASR
TLRRHQEVMGSHRWIALVGNSHANVYQGVVPGIAELQGGIGLRVVDVATGQSRGVFPDPG
ELVSGRIATHKVHIKSDYRVEIEVPRPANAARPTRPLAIEQRLAKPGMFLVEEGEGNLQT
IVHRARDTLVYRTPVRVNGKGKLYVERLSWPRVHLVPFDDMDGLLAALREMQLTRVG
NT seq
6114 nt
NT seq
+upstream
nt +downstream
nt
atgacacacacactgccccctgtccttataacccccgtaccgttggcaccggccgacacc
tggccggcagcctcggccgccctgggcaggctcgatgaactgcgcaccttactggcggac
gaactgcaagcactgccaagacccggcgaaactctgctgacggccatcggcggagtcgag
tcggccgagcgagagctggagattttcagcctgctgcaacagattgacgacttctggact
gcccccggagaaaccggggagagccgccgggagcggcttgagcctgccttgcagcgcgca
ttgcgtgatgaagccagcgtcaggattcacgagcgcgatctggaaagtggctacctggcc
tgcctgcccgccttgtccgaagtgccgcaagatgctgcgctcacttaccactccctgagc
gtgcaactgcatgatgacgagcaactggagctggccggcgtactggcgatatcccaggca
caggaccgcactctgctgcttctgccaggaatcggcatcatggccttcgccaaccaggcc
ctgatgggcgaaacgctggcgcgctggctcaacacgccgtcgctgcaaagcggtcttctg
aatacggtcgaacggcaacaacaggaacgactggctgaaatcatccaggacgccgacctg
taccttgagcccttcacggccgccgacgtgcagctacagcccttgaacacagcacccttc
aagcatgcgctggatcgcctgctgaacaaacagcgcaatgacgttcgccatgcctgcgaa
cgagcggacatagttgaccagaaacggcgtcaggagctgattcaggaagccatcgacatg
catggcatgttcggccccgcgtccatgctcgagctgcgtgagctcagcaaccggcaacgt
cagtaccagcagaacatgccggactggatgaagatcgccagtgaggccgatctgagcatt
tatagcgagcacttgcgccgctacgacgaggcgcatgccgtcatgctcagcgtgttgggc
agcgctgcatcacccgagcaattcgccgaagcacatctgcgcaggcgactggccaatgat
ctaggtcacgacctggccccgcacgcgctgaccatcgacacactgcgcacgctgccatcg
accagcgagacctaccgcgtgagccgctcgctggtgcaattggcgctctacggcctgcat
ccgaatgacgccgtcgcaggctcggacttcctcgacaacactgtcatccgcctgaatgac
gcgcctctgccagcggcctgttcgacggtaaccccggcgtacctcgccggcctgatcagc
gagctggagctgcgcgcaacctttggcgattttcagcgaacggtctaccagaaagaacac
aacctgcatctgttgcgcgtgctggcgcgaacccgcctcagcgcgctggcctgggcagcg
aagatgcaggggcatattcgccctgaagatttcgccatcgttgcggcatcgacaaccccg
ccacagaacacgccaaaccccacgttgcgcgtgcagcagatccgcctgaacagacataac
gtgatggccaggctgctggtgtttcgcaagcaggacgcgcagggtcagacagaacggctg
atcatggtcgcgctggacgctccgggccagcatttcaaggcattcgacactgaaacccac
ctgctccacgaggtggtcggctggagtgcgtcgcctgcgatgagtgcctggctgcttgat
caggtggacgtcgctgcacgccctgaactcgcgcagcaactggcggccctcagtcagaaa
ccccaaccgaaagaagacttcctgcaattcattgatcaccccgactgtgaggcagctttg
cgcagctttaccgacgaacagaccctcgtgatgctttccgagcaggccaatcacaccccg
gactggtatttgcgtgccagtcgtgaacagcgccgcgaactgctggcactcgaagaggct
atcggaggcgcactcggcaactaccaggcctacacgcaggtccagccgttcaaggactac
gttcatcagcgcgccagccagcaactcggcaagctgctgagtgtgccggccggcacgctg
gacccagatctgatcgtgatcaccagcgagcgcgaaacactgacctacaccgacatgctg
ctcaatggctacgacgacagcatcgaccctgttcgcacctctgctgacgcacaggcgacc
ttcagcggcccggagggggtggacctcagcgccctgacgcccgcgggagtggcaggctcg
gtacgcggcaaatggctggcggacgattacattgcgctgatcaggaacaccttgctgaat
actgaaaacgccggttacgccgagcgacgtcaggccagcgtgctgatcactcagctacag
atgaaagcagccgcattgcgcagtcttttgaaaggccacatcgaagcggcgcactatacc
tggctgcaacaatcgctggacaacgcgcacctgaacagtccggccgctcgcgagcaatac
ccgctgtatcccttgcagttgcatatcgacaaaccgctgatcgcttccgggctgaccgac
atcgatcaactggttattccgagccatctgctgacccatgttgaaaccgtgcagggatgc
ctggtgattctgccgatgcagattcgccacgctgcattgctctacacaccgcaagcacct
gacggcatcgagttccgtctgttcagcgacttcgcaagctcgctgaacagcgaaggcatg
atcgattattacaaggatcgctgccggatcaaggcgcgccggaccctctcatttttcctg
cgcgatatgcggcaaggcaatgccaacaagccgccggtcattcccaaagcattcatttcc
gacgttgccagcacctgctacaactggccactcgaatgcaggctgcgggacgtggaagag
accaccaccggccgcaacgacatgctgtcccatctgatctggatcagtgtcgagatcatt
gccaccgcgctgaccctgcccttccctcccgcaagctttgcggttggcagcctgttgtcc
ttgcacgaaagtggtcaggcacttgtcgcactgaccgaaggtgacaaggaccgcgccacc
gcttacatcgtgtcggcactgttcaacgggatcggcgcaggcggcgatctgctgacaggt
ctgaaaggctttggcggcgtgctgcataaccttgagcaaggccgcgaatcagcacccgtg
ctgcgctcactccagcggcagtcttccctgccccgctacgaggacctgtacccggttgag
ctgcaagagcaggccttcctgctcggcaagcccaacgccaacggccatgctgcggttttc
catgcgactcctgtcgcttcagcgccgccgattgcaaccggccagttcgccgcacgaaaa
gccagtggtgcctggcagccgctgctccctacacccgctactgtgacgcgcgcgccttca
ggtgtgcgcaccgatctggccgtcgctatttcactggataacctgccacatatcaccgac
ggtcacgcaaaaggcgtgtgtctggtcaacggcaaacattacatcgagctctccggccaa
acttttgaggtccagtacgacgccggtctgcgcggctggcaaatcatcgatccggccaat
ccattcgcgttcttcggtaatcagccggtgcgcctggatggacaggggcagtggctgatc
gtcgagcggcagcgactgcatggaggcggactggagagcccggcaaactatcgaccattg
cctgaagaggcagccggagtctcgaccgacacgttaaatgacttcgagatgccaagcacc
ctgcgcgcgcacctggacattgtcatcagcaagaaaccctttgatccgaccgggtcaggt
atggaagcctatttcgagttctatttcacagaggtgcggcaaacctttaccgcgcttcgg
gaaaaactctatcaggacgctcaggctttttttgcccgattccccctgccgcccaaactg
ccactaccgactaatgaactgcccggtagcgtcgagacgctgatcgagcacgtcttcact
cacagcaacgggctggtcttcagcgaggcaccgaaatcggtagccagcaagcgtctgctc
ctgctcaacatgcccttgctggcagaacagcgcgtcgaagttctgtacatcgaacacctg
ctgaccgacaaacacttgcccaagctggccaaataccaagcgctgggcaaaaaaagccgc
actggctccaaagagctcaagtactacctgcgcgaaaccaatcgcggggccttgaacaat
tcaagcaccgagtacgattactaccacctgatcaaggcagcccaccgctatggaatcgag
gtgcgcccgttcagctcatcgatcagttatccgtttctcggtcatccggtgctagccgct
gcggacgacccggcggctgccaccaaaatgagcaacttcttcgggcacaagctcatcagc
cacgacattgcagccgattcctcaaagcgctgggtagcgctgctcgatcagaaacttgcc
acgacacatgatcagatacccggtatcgccgacatgcatggtgtgcccagcgtacacgtc
aaagaccttcaggcaggacgcccgacccgcatcaggcaaggtgcctacgcgtcaccaccc
gggcagtcgtcgattcgctgtgacttcagcatagcgtttgcagacccgacacggactgcc
atcccgctgccccccgccacccctctggatgaaatgcttgtccgcgaactggggagccca
acgtctgttgtcgatggcgagcactgggcaggccagtacggttttgtccgggctgaaagc
gatgcatggctgcatgtggacccagaagactggaccgccaacagcccggcaacagcgatt
cagcaatccctgaccgacgcgatctacgaaatgccgctggacacccgaacgacctttcat
acgttggcgaacttcgaaaagaggggccttgatatggagtactttttcgacgatccggaa
ttcgaaactgttcgcgacatcttcgccctgcgccgcaaaagactgcaacaggatgccgcc
acgatcagcgttgcagaactgccgcctcgtccggtgttacccgtcatcgcgccgcagaca
agtacgtctgaactgcttgaaacgctatacacgcaggctgacggcatcgtcatcggcgag
tcgcatttttccgtcgccagcaaaaaactcatcatcgacaacttgccgttgctgtcagag
caaaacgtcaggacgctgtacatggagcacctgctgaccgatatacaccaggcggatctg
gatcgtttctttgaaaccggccagatgagcaagaccctgcttcacgacctgaaaacgctg
gaccaggggcattacaccgacccgaacaaggtttataccttcgagcaactggtcatcaag
gcgcgacagcagggcattgaagtgcgagccatcgactgcgcaagcagctaccacctcaaa
ggtatcgccagggaagaagccattacccgtcagcaaatgatgaactactttgcgtcgcgc
accctgcgcaggcatcaggaggtcatgggttcacacagatggatcgcgctggttggcaat
agccatgcgaatgtctatcagggcgtcgtgcccggcattgccgaactgcagggcggaatc
ggtctgcgggtcgtcgacgtggcaacaggacaatcgaggggcgtatttccagatcccgga
gagcttgtttcaggacgcatcgcaacacacaaagtacacatcaaaagcgattatcgggtc
gagattgaagtgccgcgccctgccaatgccgcccgccctaccagaccgctggccattgaa
cagcgcctcgcgaagccagggatgtttctggtggaggaaggcgaaggcaatttgcagaca
attgtgcatcgcgcacgcgacacattggtttaccgcactccggtgcgggttaacggcaag
ggcaaactgtatgtggaacgtcttagctggccgcgcgtccacctcgtgccctttgacgac
atggacgggttgctggcggcgttgcgggaaatgcaactgacgcgggtgggctga
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