Picrophilus oshimae: PTO0884
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Entry
PTO0884 CDS
T00177
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pto
Picrophilus oshimae
Pathway
pto03022
Basal transcription factors
pto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pto00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PTO0884
09124 Replication and repair
03420 Nucleotide excision repair
PTO0884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pto03021
]
PTO0884
03400 DNA repair and recombination proteins [BR:
pto03400
]
PTO0884
Enzymes [BR:
pto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PTO0884
Transcription machinery [BR:
pto03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PTO0884
DNA repair and recombination proteins [BR:
pto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PTO0884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
nSTAND3
DUF4304
Motif
Other DBs
NCBI-ProteinID:
AAT43469
UniProt:
Q6L0N3
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All DBs
Position
902023..903840
Genome browser
AA seq
605 aa
AA seq
DB search
MHRYLYVEGFRPRGWQDGITSTILSNLNNNGKIALEAPTGSGKTSFILYLAFLSGKKFIY
SVRTHNEFTRIYEDNKRFFNLDIAYMFGKKSLCPLPDRWLENDDSDRDICTGCFLKDKTI
DVKFDMDPEELCNFLLRESMENINIDIKNRSLVKNERGDYYYKREKKSLGFCPYYSVRLS
ALSHNIIVMTYNYLLNPGIRYRTFGIENFNDYCIVFDEAHNIDDFVENLGRSLRPKTVER
AIEQSMNYFPVKEYKCNDRTRLGIMLERLLSELDLNESGTLKRFSFSKDFIDNLDIDIIK
RFSDMFNDINEKNPAGQRHRNYLESLYNFLYDVFNSENSGLYYYSDKNGILLKIMYYDVS
SFLRFLNSSPVIFMSGTMPSPEHISLVWGFENIIYISVEKIFKNAGGEKKYHIVTGFTTL
NKYRLKSDTWEPMLKKYMDFIKERYNSASGSVLVAVPAYSILSGDKSISSFIDDDIKPHV
IIETRKLSFSYIKGRALREKLLIFSVHGGKLLEGVQLVNKNRSLISDVIIMGLPLIPMDD
YRTDKIKFIERQSKRNMQDNLYYENAMIKVKQAAGRSTRSENDVADIWLCDDRFSSAYWR
DIFQN
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgatatttatacgtggaaggattcaggccaagaggctggcaggatggaataacc
tcgacgattctgtcaaatttaaataataatggcaagatcgcactggaggccccaacgggc
tcaggtaaaacaagctttatactgtatcttgcatttctgtccgggaaaaaatttatatac
agtgttagaacgcacaatgaattcacaaggatatacgaggataacaaaagattctttaat
ctggatattgcatacatgtttggtaaaaaatcattgtgcccgctgccagacaggtggctt
gaaaatgatgattcagaccgtgatatatgcaccggctgctttttaaaggacaaaaccatt
gatgttaaatttgatatggatcccgaggaactatgtaattttttattaagggaatccatg
gagaatataaacatagatataaagaacagatcacttgttaaaaatgaaaggggtgattat
tattataaaagggagaagaaatctcttggattctgcccgtactattctgttaggctgtct
gcattatctcataatataatagtaatgacgtataattatcttttaaatccgggaataagg
tacagaacctttggcattgaaaattttaatgattactgcatagtttttgacgaggcgcat
aacatagacgattttgttgagaaccttgggagatcattaaggccaaaaaccgttgaaagg
gccatagaacagtcaatgaactattttccggttaaagaatacaaatgcaatgataggaca
aggcttggcataatgcttgaaagattactgtcagagctcgatttgaacgaatccggaaca
ttaaaaagattttcattctcaaaggatttcattgataatcttgatatagatataataaaa
agattcagcgacatgttcaatgacataaatgagaagaaccctgcagggcaaaggcataga
aattacctagaatcattatacaattttctatatgatgtatttaattctgagaattctggt
ttatactattacagcgataaaaatggaatattattgaaaatcatgtactatgatgtatca
tcatttttaagatttttaaacagctcacccgtgattttcatgtctggaaccatgccgtca
ccggagcatatatcactggtctggggttttgaaaatattatttacatatcagtagaaaaa
atctttaaaaatgccggcggcgagaaaaaataccatattgtcacagggtttacaacattg
aataaatacagattaaaaagcgacacatgggagccgatgttaaaaaaatacatggatttt
atcaaagaaagatataacagcgcatcaggctcggttcttgttgccgtaccggcttacagc
atcctctctggggataaaagtatatcatcatttatagatgacgatataaaaccgcatgtt
ataattgaaacaagaaaattatcattttcttatataaagggcagggcattaagggaaaaa
ctgttaatattttccgttcatggtggtaaacttctcgaaggtgttcagcttgtaaataaa
aacaggagcctgataagcgatgtcataataatgggccttccattaataccaatggacgat
tacagaactgataaaataaagttcattgaaaggcaatccaaaaggaatatgcaggataat
ctttactatgaaaacgcaatgataaaggtaaagcaggccgctggcagatcaacaaggtct
gaaaacgatgtcgccgatatatggctttgcgacgatcgcttttcatcagcttactggcgt
gacatctttcaaaattaa
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