Planktomarina temperata: RCA23_c00050
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Entry
RCA23_c00050 CDS
T03229
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ptp
Planktomarina temperata
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptp03032
]
RCA23_c00050 (gyrB)
03400 DNA repair and recombination proteins [BR:
ptp03400
]
RCA23_c00050 (gyrB)
Enzymes [BR:
ptp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RCA23_c00050 (gyrB)
DNA replication proteins [BR:
ptp03032
]
Prokaryotic type
DNA Topoisomerases
RCA23_c00050 (gyrB)
DNA repair and recombination proteins [BR:
ptp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RCA23_c00050 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AII85578
LinkDB
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Position
4567..6984
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AA seq
805 aa
AA seq
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MSEQTVDVEEYGADSIKVLRGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG
HADHVLVRINADSSVSVADNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG
LHGVGVSVVNALSVWLELRIWREGKEHVARFEHGDTAEHLKVVSECGDRTGTEVRFLAST
ETFSNLEYKFEILEKRLRELAFLNSGVRIILEDLRPAEPLRSELYYDGGVREFVKYLDRS
KSSIMEEPIYVKGTRDDIGVEVAMWWNDTYHENVLPFTNNIPQRDGGTHMAGFRGALTRT
INNYAQSSGIAKKEKISFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL
VGEKLAEWFEENPAQAKVIVGKIVEAAMAREAARKARDLTRRKTAMDVNFLAGKLKDCSE
KDPSKTEVFLVEGDSAGGSAQTGRDRMTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM
ALGTGIGRDEFNIKKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP
PLFKVSRGRSEVYLKDQPALDEYLIEQGIEGALLRLTNGEEIIGADLMRVVEEARQLKRI
VDAFPTHYPRHILEQAAIAGAFVPGAVDRDLQGMADAVARRLDLIALEYERGWQGRPTQD
RGMRLARILRGVEEVRNLDGAMLRSGEARRTGMLTQSLQDTYSGPCTLVRKDRVQVVNGP
LTLLSAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDVAEADDLFTK
LMGDVVEPRREFIQNNALNVSNLDF
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcaaactgtggatgttgaagaatatggcgcagattccattaaggttcttagg
ggcttagaggctgttcgcaaacggccggggatgtatatcggtgacacggatgatggctcc
ggtttgcatcatatggtttatgaggttgtggacaatggcatcgatgaggcgctggctggc
catgcggatcatgttttggtgcggatcaatgccgacagctcggtttcggtcgcggataat
ggtcgcggcattccagttggaattcacgaagaagagggcgtgtctgccgctgaggtgatt
atgacccagctgcatgcgggtggtaagtttgacagcaattcctacaaggtttctggcggt
ttgcacggggttggggtttcggttgtgaatgccttgtcggtatggctggaactgcgcatc
tggcgcgaaggcaaagagcatgtcgcacggttcgaacatggtgacacagcagagcaccta
aaagttgtgagcgagtgtggcgatcgcaccggcacggaagtccgtttcttggcgtcgaca
gagaccttttcaaatcttgagtataaatttgaaatattggaaaagcgcctgcgcgaattg
gcattcttgaattctggggtgcggattattcttgaagacctgcgcccggcagagcctttg
cgcagtgagctgtactacgacggcggtgtgcgtgaatttgtgaaatatctcgaccgttcc
aaatcctcaatcatggaagagccgatttatgtcaaaggcacccgtgatgatatcggtgtt
gaagtggcgatgtggtggaatgacacctatcacgaaaatgtcctgcccttcaccaataac
atcccacagcgtgatggcggcacccatatggcgggctttcgaggggccttgacccgaacg
atcaataactatgcgcaatccagcggcatcgccaaaaaagagaaaatcagcttcacaggc
gatgacgcacgcgagggtttgacctgcgtgttatccgtcaaagttcctgatcccaaattc
tccagccagaccaaagataaattggtcagctcagaggtgcgcccggcggttgagggtttg
gtgggtgagaaattggccgagtggttcgaggaaaaccctgcgcaggcaaaggttattgtt
ggcaagattgttgaggctgctatggcgcgtgaagcggcgcgcaaggcccgcgacctcacc
cggcgcaagacagcgatggatgtgaacttcttggcaggaaagctcaaggattgttcggaa
aaagacccctcaaaaactgaagtatttttggtcgaaggcgatagcgccggcggttctgcc
caaactggacgtgaccgcatgacccaagcggttttgccattgcgcgggaaaattttgaac
gtggagcgcgcgcggtttgaccggatgctgggcagccaagaaattggcaacttggttatg
gcgctgggcactggcattgggcgcgatgaatttaatatcaaaaagctacgctatcataaa
atcgtgatcatgaccgatgccgatgtggatggtgcgcatatccgcacgctcttgctgacg
ttctttttccgtcaaatgccagaattgattgaaggtggttatctctatatcgcgcaaccc
cccttgtttaaggtgagccgggggcgttctgaagtttatctcaaggaccagccagccctg
gatgaatacttgatcgaacaaggcattgagggcgctttgctgcgcttgaccaatggcgaa
gaaattattggcgccgatttgatgcgtgttgtggaagaggcgcgtcagctgaagcgcatt
gttgacgcattccccacccattacccacgtcatattttggagcaagcggcaatcgccggg
gctttcgtgcctggggcggttgatcgtgacttgcagggcatggcggacgccgtggcgcgc
cggctcgatctcattgctttggagtatgaacggggttggcaaggtcgcccaacccaggac
cgcggcatgcgcttggcgcggattttgcgcggcgtggaagaggtgcgcaatctcgatggg
gcaatgctgcggtccggcgaagcgcgtcgcacagggatgttgacccaaagtttgcaagat
acctacagcggcccgtgcacattggtgcgcaaagatcgggtgcaggtggtcaatggcccc
ctcacgctgctgagcgcgattttggaagagggtgagaaggggctgtcgctgcaacgctac
aaaggcttgggtgaaatgaaccccgatcagctttgggaaaccacattggatccagatgcg
cggacattgttgcaagtgcgggttgatgatgtcgcggaagcggatgatctgtttaccaag
ctgatgggcgatgtggtggagccgcgtcgggaattcatccaaaataacgcgctcaatgtg
tccaacttggatttctaa
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