Paracoccus yeei: A6J80_22380
Entry
A6J80_22380 CDS
T04781
Gene name
ligD
Definition
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pye
Paracoccus yeei
Pathway
pye03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pye00001
]
Genetic Information Processing
Replication and repair
03450 Non-homologous end-joining
A6J80_22380 (ligD)
Enzymes [BR:
pye01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A6J80_22380 (ligD)
DNA repair and recombination proteins [BR:
pye03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A6J80_22380 (ligD)
SSDB
Motif
Pfam:
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
HC2
Other DBs
NCBI-ProteinID:
ARC39037
UniProt:
A0A1V0GYX4
LinkDB
Position
unnamed5:complement(135336..137873)
AA seq
845 aa
MALETYRKKRDFSATPEPEGRAGKTGGRSFVIQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLDPSEKRLAVHVEDHPLDYGDFEGTIPKGQYGGGTVIVWDRGTWSPIGDAEKAYAKGH
MEFELHGEKLSGRWHLVRMRGKSGEKRDNWLLIKGDDDQARTEGDILEERPESVKTGRQI
AEVAEGVEKPARKPATRKADARKPAPRKDAPRKDAPRKAAAKDAGTPAVKGAKRGALPDF
VPPMLATLVSSAPSGKEWLHEIKFDGYRLQARVEDGAVRLLTRSGLDWSERFGDGVLKAL
AALPVKTALIDGELVVEAGSGASDFSALQADLSEGRSDRFVFYAFDLMHLDGMDLRGAAL
AERKALLQPLLAEAPDTLRYSDHFAESGDMVLQHACQLSLEGIVSKLADSPYRAGRGKAW
VKSKCSARQEFVIGGYVPSMVSPKLIGSLVLGVHQGGTLRHVGRVGTGFSAAVAADLFRR
LEPMTRKTSPFDGKLTATEARQVRYVEPELVAEVEFRAWTADGHLRHAAFRGLREDKPAA
EIVREEPKAGAKPAAPPRRTVRLTHPDRIYWPDAGVTKEGLADYYAEVWRHIAPHVVGRP
LALLRCPGGIDGQRFFQKHAWKGLNPRIVQVRDPKDKAGEPLIAIEDLDGLMGLVQAAAL
EIHPWGSTLASWEKPDQIVMDLDPGEGVPWTRVIEAALEIRQRLKDAGLASFVKTSGGKG
LHVVAPLKPQATWPTVKSFTKALADSMAKDDPDRYVATVAKSKRQGKILIDYLRNQRGAT
AVAAYSTRARPGAPVSTPLDWDELGPDIGPAHFTVANLPARLAALTDNPWGGFRAAAVPL
PTRKR
NT seq
2538 nt
+upstream
nt +downstream
nt
atggcgctggagacctatcgcaagaagcgcgatttttccgcgacccccgagcccgagggc
cgcgcgggcaagaccggcggccgcagcttcgtcatccagaagcacgatgcgacccggctg
cattacgatttccggcttgagatggacggggtgctgaaaagctgggccgtgaccaaggga
ccatcgctcgaccccagcgaaaagcggctggccgtccatgtcgaggaccacccgttggac
tatggcgatttcgagggcacgattcccaagggccaatatggcggcggcaccgtgatcgtc
tgggaccgcggcacctggtcgcccatcggcgacgctgaaaaggcctatgccaagggccat
atggaattcgagctgcatggcgaaaagctgtccgggcgctggcatctggtcaggatgcgc
ggcaagtccggcgagaagcgcgacaactggctgctgatcaagggcgacgacgaccaggcc
cggaccgaaggcgacatccttgaggaacgtccggaatccgtcaagaccggccgccagatc
gccgaggtggccgagggcgtcgaaaagcccgcgcgcaagcctgccacccgaaaggccgac
gcacgcaagcctgccccgcgcaaggatgccccgcgcaaggatgccccgcgcaaggctgcg
gcaaaggacgcaggcacgcccgccgtcaagggcgccaagcgcggcgcgctgcccgatttc
gtgccaccgatgctggccacgctggtttcctcggccccttcgggaaaggaatggctgcac
gagatcaagttcgacggctatcgccttcaggccagggtcgaggatggcgcggtccgcctg
ctgacgcgcagcggactcgactggtcggaacgcttcggggacggcgtgctgaaggccctg
gccgccctgccggtcaagacggcgctgatcgacggcgagctggtggtcgaagccggctcc
ggcgcctcggacttttcggcgctgcaggcggatctgagcgaggggcgcagcgaccgcttt
gtgttctacgccttcgacctgatgcatctggacgggatggatctgcgcggcgccgcgctg
gccgagcgcaaggccctgctgcagccgctgctggccgaggccccggatacgctgcgctac
agcgaccatttcgccgaaagcggcgacatggtgctgcaacatgcctgccagctgagcctg
gaagggatcgtctcgaagctggccgacagcccgtatcgcgcgggacggggcaaggcctgg
gtcaaatcgaaatgctcggcccggcaggaattcgtgatcggcggctatgtcccctcgatg
gtgtcgcccaagctgatcggatcgctggtgctgggcgtgcatcagggcggcacgctgcgc
catgtgggccgcgtcggcacgggcttttccgccgccgtggccgcggacctgttccggcgg
ctggaacccatgacgcgcaagaccagcccctttgacggcaagctgaccgcgaccgaggcc
cggcaggtccgctatgtcgaacccgaactggtggccgaggtcgagttccgcgcctggacc
gccgacggccacctgcgccacgccgcctttcgcgggctgcgcgaggacaagcccgcggcc
gagatcgtgcgcgaggaaccgaaagcgggcgcaaaacccgcggcacccccacgccgcacg
gtgcgcctgacccatcccgaccgcatctactggcccgacgccggtgtcaccaaggagggg
ctggccgattactatgccgaggtctggcgccacattgccccccatgtcgtcggccgcccg
ctggcgctgctgcgctgcccaggcgggatcgacgggcagaggttctttcagaagcacgcc
tggaaggggctgaaccccaggatcgtgcaggtcagggaccccaaggacaaggcgggcgag
cccctgatcgccatcgaggacctggacgggttgatggggctggtccaggccgccgcgctg
gaaatccacccctggggttcgacgctggccagttgggaaaagccggaccagatcgtcatg
gacctggacccgggcgagggcgtgccctggacccgggtgatcgaggccgcgctggaaatc
cgccagcgcctgaaggatgcgggactggcatccttcgtcaagacctcgggtggcaagggg
ctgcatgtggtggcgccgctgaagccgcaggcgacctggcccacggtcaagagctttacc
aaggctctcgccgacagcatggccaaggatgaccccgaccgctatgtcgcgaccgtcgcc
aagtccaagcggcagggcaagatcctgatcgattatctgcgcaaccagcgcggagcgacg
gccgttgcggcctattcgacacgggcgcggcccggcgcgccggtctcgacgccgctggat
tgggacgaactcggccccgacatcggaccggcgcatttcacggtagcgaatctgcccgcc
cggctggccgcgctgacagacaatccgtggggcgggttccgcgccgcagccgtcccgctg
cccacccgcaagcgctag
DBGET
integrated database retrieval system
